Literature DB >> 30789745

Convolutional Neural Network Analysis of Two-Dimensional Hyperfine Sublevel Correlation Electron Paramagnetic Resonance Spectra.

Alexander T Taguchi1, Ethan D Evans1, Sergei A Dikanov2, Robert G Griffin1.   

Abstract

A machine learning approach is presented for analyzing complex two-dimensional hyperfine sublevel correlation electron paramagnetic resonance (HYSCORE EPR) spectra with the proficiency of an expert spectroscopist. The computer vision algorithm requires no training on experimental data; rather, all of the spin physics required to interpret the spectra are learned from simulations alone. This approach is therefore applicable even when insufficient experimental data exist to train the algorithm. The neural network is demonstrated to be capable of utilizing the full information content of two-dimensional 14N HYSCORE spectra to predict the magnetic coupling parameters and their underlying probability distributions that were previously inaccessible. The predicted hyperfine ( a, T) and 14N quadrupole ( K, η) coupling constants deviate from the previous manual analyses of the experimental spectra on average by 0.11 MHz, 0.09 MHz, 0.19 MHz, and 0.09, respectively.

Entities:  

Year:  2019        PMID: 30789745      PMCID: PMC8300483          DOI: 10.1021/acs.jpclett.8b03797

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  13 in total

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2.  Spinach--a software library for simulation of spin dynamics in large spin systems.

Authors:  H J Hogben; M Krzystyniak; G T P Charnock; P J Hore; Ilya Kuprov
Journal:  J Magn Reson       Date:  2010-11-17       Impact factor: 2.229

3.  EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

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Journal:  J Magn Reson       Date:  2005-09-26       Impact factor: 2.229

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5.  NMRNet: a deep learning approach to automated peak picking of protein NMR spectra.

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Journal:  Bioinformatics       Date:  2018-08-01       Impact factor: 6.937

6.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

7.  Interactions of intermediate semiquinone with surrounding protein residues at the Q(H) site of wild-type and D75H mutant cytochrome bo3 from Escherichia coli.

Authors:  Myat T Lin; Amgalanbaatar Baldansuren; Richard Hart; Rimma I Samoilova; Kuppala V Narasimhulu; Lai Lai Yap; Sylvia K Choi; Patrick J O'Malley; Robert B Gennis; Sergei A Dikanov
Journal:  Biochemistry       Date:  2012-04-22       Impact factor: 3.162

8.  Plasticity in the High Affinity Menaquinone Binding Site of the Cytochrome aa3-600 Menaquinol Oxidase from Bacillus subtilis.

Authors:  Sophia M Yi; Alexander T Taguchi; Rimma I Samoilova; Patrick J O'Malley; Robert B Gennis; Sergei A Dikanov
Journal:  Biochemistry       Date:  2015-08-06       Impact factor: 3.162

9.  Continuous-wave and pulsed EPR characterization of the [2Fe-2S](Cys)3(His)1 cluster in rat MitoNEET.

Authors:  Toshio Iwasaki; Rimma I Samoilova; Asako Kounosu; Daijiro Ohmori; Sergei A Dikanov
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

10.  Deep neural network processing of DEER data.

Authors:  Steven G Worswick; James A Spencer; Gunnar Jeschke; Ilya Kuprov
Journal:  Sci Adv       Date:  2018-08-24       Impact factor: 14.136

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  1 in total

1.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

  1 in total

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