| Literature DB >> 30789128 |
Imen Bouzouita, Andrea Maurizio Cabibbe, Alberto Trovato, Henda Daroui, Asma Ghariani, Basma Midouni, Leila Essalah, Emna Mehiri, Daniela Maria Cirillo, Leila Slim Saidi.
Abstract
To investigate transmission of drug-resistant strains of Mycobacterium tuberculosis in Tunisia, we performed whole-genome sequencing on 46 multidrug-resistant strains isolated during 2012-2016. Core-genome multilocus sequence typing grouped 30 strains (65.2%) into 3 clusters, indicating extensive recent transmission and Haarlem clone predominance. Whole-genome sequencing might help public health services undertake appropriate control actions.Entities:
Keywords: MDR TB; Mycobacterium tuberculosis; Tunisia; WGS; XDR TB; antimicrobial resistance; bacteria; cgMLST; drug resistance marker; extensively drug-resistant; multidrug-resistant; tuberculosis and other mycobacteria; whole-genome sequencing
Mesh:
Year: 2019 PMID: 30789128 PMCID: PMC6390739 DOI: 10.3201/eid2503.181370
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Summary of the evolution of TB surveillance, diagnosis, and treatment in Puerto Rico over 3 periods*
| Period | Surveillance | Diagnosis | Treatment |
|---|---|---|---|
| 1898–1946 | Passive, relying on voluntary reporting; Bureau of TB established in 1924; TB becomes a part of vital statistics centrally compiled by PRDH in 1931 | Primarily clinical diagnosis; TST progressively routinized after 1929; chest radiography and limited sputum examination in TB dispensaries since 1935 | Pneumothorax procedures, bed rest in sanatorium, and isolation of patients with active TB |
| 1947–1992 | TB recording and reporting through PRDH TB centers and centralized at PRDH; private physicians, hospitals, and VA report to PRDH; case-level data collection and reporting to NTSS uses RVCT | TST and chest radiography routine for screening (e.g., medical cards); limited sputum AFB examination and ability to culture | Three-drug regimen of streptomycin, PAS, and isoniazid; free treatment in 3-mo courses for total treatment of |
| 1993–2015 | RVCT revised and expanded; CDC NTSS electronic registry launched; molecular testing for DST at PRDH laboratory and genotyping and molecular testing through CDC introduced | Diagnosis relies on sputum AFB examination and culture; screening with TST and chest radiography; few cases diagnosed clinically | DOT, 4-drug regimen of isoniazid, rifampin, pyrazinamide, and ethambutol; intensive and continuation phase for 6–8 mo; regimens individualized according to DST results |
*AFB, acid-fast bacillus; CDC, Centers for Disease Control and Prevention; DOT, directly observed therapy; DST, drug-sensitivity testing; NTSS, National TB Surveillance System; PAS, para-aminosalicylic acid; PRDH, Puerto Rico Department of Health; RVCT, Report of Verified Case of Tuberculosis; TB, tuberculosis; TST, tuberculin skin testing; VA, Veterans Administration.
Figure 1Timeline of key TB control events in Puerto Rico (right) and developments in healthcare and politics (left), over 3 periods: 1898–1946, 1947–1992, and 1993–2015. BCG, bacillus Calmette-Guérin vaccine; CDC, US Centers for Disease Control and Prevention; DOT, directly observed therapy; La Reforma, Reforma de Salud de Puerto Rico; PAS, para-aminosalicylic acid; NTGS, National TB Genotyping Service; NTSS, National TB Surveillance System; PRDH, Puerto Rico Department of Health; PRERA, Puerto Rico Emergency Relief Administration; RVCT, report of verified case of tuberculosis; TB, tuberculosis; TB GIMS, TB Genotyping Information Management System; TST, tuberculin skin testing; USPHS, United States Public Health Service; Xpert MTB/RIF machine, multidrug/rifampin resistance machine (Cepheid, http://www.cepheid.com).
Figure 2Mortality rate (no. deaths/100,000 population, on logarithmic scale) for reported TB cases in Puerto Rico and the United States, 1932–2015. Mortality data for Puerto Rico were not recorded for 1967–1969 and 1972.
Figure 3Incidence (no. cases/100,000 population, on logarithmic scale) of reported TB cases in Puerto Rico and the United States, 1953–2015. Puerto Rico data for 1953–1992 sourced from US Centers for Disease Control and Prevention annual TB reports; data not available for 1977; data for 1993–2015 sourced from the Centers for Disease Control and Prevention Online Tuberculosis Information System (https://wonder.cdc.gov/tb.html).
Patient demographics, verification criteria, multidrug-resistant tuberculosis results, HIV status, receipt of directly observed therapy, and therapy completion in <1 y for reported tuberculosis case cohorts, 1993–1997 and 2011–2015*
| Variable | 1,272 Reported cases, 1993–1997 no. (%) patients | 266 Reported cases, 2011–2015 no. (%) patients |
|---|---|---|
| Age, y | ||
| 0–4 | 39 (3) | 0 |
| 5–14 | 10 (1) | 0 |
| 15–24 | 60 (5) | 13 (5) |
| 25–44 | 449 (35) | 66 (25) |
| 45–64 | 347 (27) | 112 (42) |
|
| 278 (22) | 73 (27) |
| Not available | 89 (7) | 2 (1) |
| M | 869 (68) | 188 (71) |
| F | 403 (32) | 78 (29) |
| Origin of birth | ||
| United States | 1,210 (95) | 222 (83) |
| Other than United States | 58 (5) | 44 (17) |
| Not available | 4 (<1) | 0 (0) |
| Verification criteria | ||
| Positive culture | 1,090 (86) | 225 (85) |
| Clinical case definition | 82 (6) | 14 (5) |
| Provider diagnosis | 70 (6) | 26 (10) |
| Positive smear/tissue | 30 (2) | 0 () |
| Not available | 0 () | 1 (<1) |
| Multidrug-resistant tuberculosis | ||
| Yes | 24 (2) | 6 (2) |
| No | 753 (59) | 210 (79) |
| Not applicable or available | 495 (39) | 50 (19) |
| HIV status | ||
| Positive | 386 (30) | 46 (17) |
| Negative | 292 (23) | 199 (75) |
| Not reported | 594 (47) | 21 (8) |
| Directly observed therapy | ||
| Direct only | 253 (20) | 134 (50) |
| Self only | 807 (63) | 63 (24) |
| Both | 25 (2) | 5 (2) |
| Not applicable or available | 187 (15) | 64 (24) |
| Therapy completed in | ||
| Yes | 604 (47) | 140 (53) |
| No | 113 (9) | 6 (2) |
| Not applicable or not available | 555 (44) | 120 (45) |