| Literature DB >> 30785955 |
Fernanda S Tonin1,2, Helena H Borba3, Antonio M Mendes1, Astrid Wiens3, Fernando Fernandez-Llimos2,4, Roberto Pontarolo3.
Abstract
BACKGROUND: The conduction and report of network meta-analysis (NMA), including the presentation of the network-plot, should be transparent. We aimed to propose metrics adapted from graph theory and social network-analysis literature to numerically describe NMA geometry.Entities:
Mesh:
Year: 2019 PMID: 30785955 PMCID: PMC6382117 DOI: 10.1371/journal.pone.0212650
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Metrics definition.
| Parameter or metric | Definition |
|---|---|
| Number of nodes | Total number of interventions represented as nodes (vertices) of the network (graph) |
| Number of edges | Total number of direct comparisons between the nodes of the network, referred to as edges or lines |
| Number of studies | Total number of studies included in the network for each direct comparison or edge |
| Average degree | The degree of a node is the number of edges incident to the node, with loops counted twice. The total degree of a graph is the sum of the degree of all nodes. The average degree is a network level measure. It is calculated from the value of degree of all nodes in the graph, divided by the number of nodes. |
| Average weighted degree | A graph is a weighted graph, if a number is assigned to each edge. In this case, the weight is the number of studies per edge. The weight of the graph is the sum of the weights given to all edges, divided by the total number of nodes. |
| Density | Density is a measure of the connectedness of a graph, and is defined as the number of connections, divided by the number of possible connections. The graph is dense if the number of edges approaches the maximal number of edges possible (value closer to 1.0), otherwise is sparse (value closer to 0). |
| Percentage of common comparators | Complete graphs have the feature that each pair of nodes has an edge connecting them. In this case, all nodes are directly linked and can be considered ‘common comparators’. The higher the percentage of common comparators, the more strongly connected is the network. Different from what may occur with density, this metric may better represent the visual display of a network. |
| Percentage of strong edges | The number of studies in an edge is proportional to the existing direct evidence among two nodes. Edges with only one study can be considered a weak piece of the network. Strong edges contribute more to the robustness of the evidence. This metric accounts for the percentage of edges with more than one study (named ‘strong edges’). |
| Mean thickness | The thickness of an edge is the number of studies assigned to that edge. The mean thickness of a graph is the total number of studies, divided by the total number of edges. This can be obtained by the division of the average weighted degree by the average degree. However, it does not consider the dispersion of the values. |
| Median thickness with dispersion value | Different from the mean thickness, the median thickness is the expression of the median number of studies per edge in a network, along with a dispersion measure reported as interquartile ranges (IQR 25% and 75%). |
| Average path length | The length of a path is the number of edges that a path uses to reach node to node. The average path length is the number of steps along with the shortest paths for all possible pairs of nodes in the network. |
*All parameters and metrics were adapted from previous studies on social network analysis and graph theory [23–26].
±Metrics especially created to support the report of NMAs geometry.
Fig 1Flowchart of the included NMAs for network-plot reproduction and geometry assessment.
Assessment of NMAs geometry.
| Descriptive analyses (n = 167 NMAs) | N. of nodes | N. of edges | N. of studies | Avg. degree | Avg. weight degree | Density | Common comparator % | Strong edges % | Mean thickness | Median | Avg. path length |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mean | 8.83 | 12.0 | 30.23 | 2.63 | 7.98 | 0.43 | 68.0 | 53.0 | 2.95 | 2.17 | 1.73 |
| SD | 5.10 | 8.49 | 29.32 | 0.82 | 7.3 | 0.23 | 26.0 | 30.0 | 2.42 | 1.77 | 0.47 |
| Median | 8.00 | 10.00 | 22.00 | 2.55 | 5.67 | 0.39 | 7.3 | 55.0 | 2.18 | 2.0 | 1.69 |
| IQR 25 | 6.00 | 6.00 | 13.00 | 2.00 | 3.50 | 0.26 | 50.0 | 29.0 | 1.50 | 1.0 | 1.50 |
| IQR 75 | 11.00 | 16.00 | 35.00 | 3.00 | 9.33 | 0.53 | 89.0 | 75.0 | 3.54 | 3.00 | 1.89 |
| Minimum | 3.00 | 3.00 | 3.00 | 1.50 | 1.57 | 0.07 | 9.0 | 0.0 | 1.00 | 1.00 | 1.00 |
| Maximum | 42.00 | 66.00 | 157.0 | 5.14 | 50.00 | 1.00 | 100.0 | 100 | 20.00 | 13.00 | 5.25 |
| Asymmetry ± error | 2.75 | 2.52 | 2.31 | 0.94 | 2.63 | 1.01 | -0.52 | -0.02 | 3.33 ±0.19 | 3.12 | 2.77 |
N.: number; Avg: average; SD: Standard deviation; IQR: interquartile range; %: represented as percentage
Fig 2Sensitivity analyses for the assessment of geometry of NMAs with similar number of nodes and edges.
Examples of three networks-plots from the 167 analyzed NMAs. Highlighted parameters showed different values among similar NMAs.
Fig 3Sensitivity analyses for the assessment of NMAs with equal geometry and different numbers of studies.
Examples of three networks-plots from the 167 analyzed NMAs. Highlighted parameters showed different values among similar NMAs.
Correlation analyses of NMA’s geometry parameters and metrics.
| Correlation Spearman’s Rho | N. of nodes | N. of edges | N. of studies | Avg. degree | Avg. weight degree | Density | Common comparator | Strong edges | Mean thickness | Median thickness | Avg. path length |
|---|---|---|---|---|---|---|---|---|---|---|---|
| N. of nodes | 0.437 | 0.285 | -0.170 | -0.209 | 0.425 | -0.323 | -0.430 | ||||
| p-value | <0.001 | 0.022 | 0.028 | 0.007 | <0.001 | 0.001 | <0.001 | ||||
| N. of edges | 0.113 | -0.490 | 0.163 | 0.305 | -0.165 | -0.294 | 0.416 | ||||
| p-value | 0.145 | <0.001 | 0.035 | 0.002 | 0.035 | <0.001 | <0.001 | ||||
| N. of studies | -0.130 | 0.220 | -0.352 | 0.540 | 0.359 | 0.080 | |||||
| p-value | 0.093 | 0.004 | 0.001 | <0.001 | <0.001 | 0.300 | |||||
| Avg. degree | 0.503 | 0.264 | -0.012 | 0.129 | 0.033 | -0.270 | |||||
| p-value | <0.001 | <0.001 | 0.877 | 0.096 | 0.669 | <0.001 | |||||
| Avg. weight. degree | 0.473 | 0.494 | -0.482 | ||||||||
| p-value | <0.001 | <0.001 | <0.001 | ||||||||
| Density | -0.441 | 0.424 | 0.473 | ||||||||
| p-value | <0.001 | <0.001 | <0.001 | ||||||||
| Common comparator | 0.157 | 0.233 | 0.186 | ||||||||
| p-value | 0.042 | 0.020 | 0.016 | ||||||||
| Strong edges | -0.427 | ||||||||||
| p-value | <0.001 | ||||||||||
| Mean thickness | -0.423 | ||||||||||
| p-value | <0.001 | ||||||||||
| Median thickness | -0.464 | ||||||||||
| p-value | <0.001 | ||||||||||
| Avg. path length | |||||||||||
| p-value |
N.: number; Avg: average. Bold values show moderate-very strong and statistically significant correlation between metrics.