Literature DB >> 30783016

It's all about the T: transcription termination in archaea.

Lisa-Katharina Maier1, Anita Marchfelder1.   

Abstract

One of the most fundamental biological processes driving all life on earth is transcription. The, at first glance, relatively simple cycle is divided into three stages: initiation at the promoter site, elongation throughout the open reading frame, and finally termination and product release at the terminator. In all three processes, motifs of the template DNA and protein factors of the transcription machinery including the multisubunit polymerase itself as well as a broad range of associated transcription factors work together and mutually influence each other. Despite several decades of research, this interplay holds delicate mechanistic and structural details as well as interconnections yet to be explored. One of the surprising characteristics of archaeal biology is the use of eukaryotic-like information processing systems against a backdrop of a bacterial-like genome. Archaeal genomes usually comprise main chromosomes alongside chromosomal plasmids, and the genetic information is encoded in single transcriptional units as well as in multicistronic operons alike their bacterial counterparts. Moreover, archaeal genomes are densely packed and this necessitates a tight regulation of transcription and especially assured termination events in order to prevent read-through into downstream coding regions and the accumulation of antisense transcripts.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Keywords:  Haloferax volcanii; archaea; transcription termination

Mesh:

Year:  2019        PMID: 30783016     DOI: 10.1042/BST20180557

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  9 in total

1.  Archaeal transcription.

Authors:  Breanna R Wenck; Thomas J Santangelo
Journal:  Transcription       Date:  2020-10-28

2.  RNA processing machineries in Archaea: the 5'-3' exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3'-5' exoribonucleolytic RNA exosome machinery.

Authors:  Duy Khanh Phung; Clarisse Etienne; Manon Batista; Petra Langendijk-Genevaux; Yann Moalic; Sébastien Laurent; Sophie Liuu; Violette Morales; Mohamed Jebbar; Gwennaele Fichant; Marie Bouvier; Didier Flament; Béatrice Clouet-d'Orval
Journal:  Nucleic Acids Res       Date:  2020-04-17       Impact factor: 16.971

3.  3' Untranslated Regions Are Modular Entities That Determine Polyadenylation Profiles.

Authors:  Kai Hin Lui; Joseph V Geisberg; Zarmik Moqtaderi; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2022-08-16       Impact factor: 5.069

4.  The Viral Susceptibility of the Haloferax Species.

Authors:  Zaloa Aguirre Sourrouille; Sabine Schwarzer; Sebastian Lequime; Hanna M Oksanen; Tessa E F Quax
Journal:  Viruses       Date:  2022-06-20       Impact factor: 5.818

5.  RNA Sequence and Structure Determinants of Pol III Transcriptional Termination in Human Cells.

Authors:  Matthew S Verosloff; William K Corcoran; Taylor B Dolberg; David Z Bushhouse; Joshua N Leonard; Julius B Lucks
Journal:  J Mol Biol       Date:  2021-04-01       Impact factor: 6.151

Review 6.  Regulation of Transcription Termination of Small RNAs and by Small RNAs: Molecular Mechanisms and Biological Functions.

Authors:  Jiandong Chen; Teppei Morita; Susan Gottesman
Journal:  Front Cell Infect Microbiol       Date:  2019-06-12       Impact factor: 5.293

7.  Discovery of 20 novel ribosomal leader candidates in bacteria and archaea.

Authors:  Iris Eckert; Zasha Weinberg
Journal:  BMC Microbiol       Date:  2020-05-24       Impact factor: 3.605

8.  aCPSF1 cooperates with terminator U-tract to dictate archaeal transcription termination efficacy.

Authors:  Jie Li; Lei Yue; Zhihua Li; Wenting Zhang; Bing Zhang; Fangqing Zhao; Xiuzhu Dong
Journal:  Elife       Date:  2021-12-29       Impact factor: 8.140

Review 9.  β-CASP proteins removing RNA polymerase from DNA: when a torpedo is needed to shoot a sitting duck.

Authors:  Jana Wiedermannová; Libor Krásný
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

  9 in total

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