Literature DB >> 30777643

Towards Building a Plant Cell Atlas.

Seung Y Rhee1, Kenneth D Birnbaum2, David W Ehrhardt3.   

Abstract

Enormous societal challenges, such as feeding and providing energy for a growing population in a dramatically changing climate, necessitate technological advances in plant science. Plant cells are fundamental organizational units that mediate the production, transport, and storage of our primary food sources, and they sequester a significant proportion of the world's carbon. New technologies allow comprehensive descriptions of cells that could accelerate research across fields of plant science. Complementary to the efforts towards understanding the cellular diversity in human brain and immune systems, a Plant Cell Atlas (PCA) that maps molecular machineries to cellular and subcellular domains, follows their dynamic movements, and describes their interactions would accelerate discovery in plant science and help to solve imminent societal problems.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Plant Cell Atlas; data science; imaging; nanotechnology; proteomics; single-cell profiling

Mesh:

Year:  2019        PMID: 30777643     DOI: 10.1016/j.tplants.2019.01.006

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  23 in total

1.  Visualization of Protein Coding, Long Noncoding, and Nuclear RNAs by Fluorescence in Situ Hybridization in Sections of Shoot Apical Meristems and Developing Flowers.

Authors:  Weibing Yang; Christoph Schuster; Nathanaël Prunet; Qingkun Dong; Benoit Landrein; Raymond Wightman; Elliot M Meyerowitz
Journal:  Plant Physiol       Date:  2019-11-13       Impact factor: 8.340

2.  Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID.

Authors:  Andrea Mair; Shou-Ling Xu; Tess C Branon; Alice Y Ting; Dominique C Bergmann
Journal:  Elife       Date:  2019-09-19       Impact factor: 8.140

3.  Single-cell genomics revolutionizes plant development studies across scales.

Authors:  Mingyuan Zhu; Isaiah W Taylor; Philip N Benfey
Journal:  Development       Date:  2022-03-14       Impact factor: 6.868

Review 4.  Sample-multiplexing approaches for single-cell sequencing.

Authors:  Yulong Zhang; Siwen Xu; Zebin Wen; Jinyu Gao; Shuang Li; Sherman M Weissman; Xinghua Pan
Journal:  Cell Mol Life Sci       Date:  2022-08-05       Impact factor: 9.207

Review 5.  Advances and Opportunities in Single-Cell Transcriptomics for Plant Research.

Authors:  Carolin Seyfferth; Jim Renema; Jos R Wendrich; Thomas Eekhout; Ruth Seurinck; Niels Vandamme; Bernhard Blob; Yvan Saeys; Yrjo Helariutta; Kenneth D Birnbaum; Bert De Rybel
Journal:  Annu Rev Plant Biol       Date:  2021-03-17       Impact factor: 26.379

Review 6.  Plant multiscale networks: charting plant connectivity by multi-level analysis and imaging techniques.

Authors:  Xi Zhang; Yi Man; Xiaohong Zhuang; Jinbo Shen; Yi Zhang; Yaning Cui; Meng Yu; Jingjing Xing; Guangchao Wang; Na Lian; Zijian Hu; Lingyu Ma; Weiwei Shen; Shunyao Yang; Huimin Xu; Jiahui Bian; Yanping Jing; Xiaojuan Li; Ruili Li; Tonglin Mao; Yuling Jiao; Haiyun Ren; Jinxing Lin
Journal:  Sci China Life Sci       Date:  2021-03-12       Impact factor: 6.038

Review 7.  Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities.

Authors:  Rachel Shahan; Trevor M Nolan; Philip N Benfey
Journal:  J Exp Bot       Date:  2021-10-13       Impact factor: 7.298

Review 8.  A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.

Authors:  Aleksandr Bobrovskikh; Alexey Doroshkov; Stefano Mazzoleni; Fabrizio Cartenì; Francesco Giannino; Ulyana Zubairova
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

Review 9.  Network-based approaches for understanding gene regulation and function in plants.

Authors:  Dae Kwan Ko; Federica Brandizzi
Journal:  Plant J       Date:  2020-08-28       Impact factor: 6.417

10.  Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era.

Authors:  Kenneth Acosta; Klaus J Appenroth; Ljudmilla Borisjuk; Marvin Edelman; Uwe Heinig; Marcel A K Jansen; Tokitaka Oyama; Buntora Pasaribu; Ingo Schubert; Shawn Sorrels; K Sowjanya Sree; Shuqing Xu; Todd P Michael; Eric Lam
Journal:  Plant Cell       Date:  2021-10-11       Impact factor: 12.085

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