| Literature DB >> 30769823 |
Iogann Tolbatov1, Cecilia Coletti2, Alessandro Marrone3, Nazzareno Re4.
Abstract
NeutEntities:
Keywords: DFT calculations; N-heterocyclic carbenes; anticancer; gold(I) complexes; proteins
Mesh:
Substances:
Year: 2019 PMID: 30769823 PMCID: PMC6412330 DOI: 10.3390/ijms20040820
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Scheme 1Reaction scheme and considered nucleophiles. Attacking atoms in bold.
Figure 1Calculated geometrical structure of the IMeAuCl complex. Bond lengths (purple in the figure) in Å, angles (green in the figure) in degrees.
Enthalpies/Gibbs free energies for reactions with various nucleophiles. Reported values are calculated at the B3LYP/LACV3P**++//B3LYP/LACVP** level and reported in kcal/mol in format Enthalpy (ΔH)/Gibbs free energy (ΔG) (in solution). R, P, TS, RA, and PA stand for reactant, product, transition state, reactant-adduct, and product-adduct, respectively.
| Reaction with | R → P | R → TS | ||
|---|---|---|---|---|
| ΔH | ΔG | ΔH | ΔG | |
| H2O | 7.2 | 1.3 | 16.8 | 23.0 |
| Ala N-terminal | −6.6 | −11.2 | 11.9 | 18.8 |
| Arg | −11.0 | −16.1 | 11.3 | 18.3 |
| Cys | −3.5 | −9.1 | 10.9 | 18.1 |
| Cys– | −16.8 | −21.4 | 11.6 | 17.4 |
| His | −8.3 | −13.4 | 14.1 | 20.6 |
| Lys | −10.2 | −14.4 | 9.0 | 16.2 |
| Met | −5.4 | −9.8 | 11.5 | 18.2 |
| Sec | −2.2 | −6.7 | 11.2 | 17.6 |
| Sec– | −19.2 | −23.8 | 6.7 | 12.8 |
| Gln/Asn (amidic form) | 6.0 | 2.4 | 17.5 | 24.8 |
| Gln/Asn (imidic form) * | −7.3 | −12.6 | 10.0 | 16.8 |
| Glu/Asp acid | −2.2 | −7.0 | 18.2 | 24.7 |
* Reactant for the imidic form of Gln/Asn is 16.4 kcal/mol higher than its amidic form, so all the values for the imidic form should be augmented by this value before its comparison with the amidic form. Additionally, see Figure S1.
Figure 2Transition states for selected nucleophiles. All distances in angstroms, all angles in degrees.
Figure 3Reaction profiles for IMeAuCl interacting with selected nucleophiles. Values in kcal/mol are calculated at the B3LYP/LACV3P**++//B3LYP/LACVP** level. R, P, TS, RA, and PA stand for reactant, product, transition state, reactant-adduct, and product-adduct, respectively.
Scheme 2Amidic/imidic tautomer equilibrium of glutamine/asparagine.
Figure 4Solvent accessible surface (SAS) calculated on an X-ray structure of Thaumatin-1 (pdb entry 3qy5). Arrows indicate metal bound amino acids. Stars indicate metal centers with an attached carbene ligand.