Literature DB >> 31744343

Structural and functional modularity of the U2 snRNP in pre-mRNA splicing.

Clarisse van der Feltz1, Aaron A Hoskins1.   

Abstract

The U2 small nuclear ribonucleoprotein (snRNP) is an essential component of the spliceosome, the cellular machine responsible for removing introns from precursor mRNAs (pre-mRNAs) in all eukaryotes. U2 is an extraordinarily dynamic splicing factor and the most frequently mutated in cancers. Cryo-electron microscopy (cryo-EM) has transformed our structural and functional understanding of the role of U2 in splicing. In this review, we synthesize these and other data with respect to a view of U2 as an assembly of interconnected functional modules. These modules are organized by the U2 small nuclear RNA (snRNA) for roles in spliceosome assembly, intron substrate recognition, and protein scaffolding. We describe new discoveries regarding the structure of U2 components and how the snRNP undergoes numerous conformational and compositional changes during splicing. We specifically highlight large scale movements of U2 modules as the spliceosome creates and rearranges its active site. U2 serves as a compelling example for how cellular machines can exploit the modular organization and structural plasticity of an RNP.

Entities:  

Keywords:  Pre-mRNA; RNA; SF3B1; snRNP; spliceosome; splicing

Mesh:

Substances:

Year:  2019        PMID: 31744343      PMCID: PMC6934263          DOI: 10.1080/10409238.2019.1691497

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  214 in total

1.  Functional recognition of 5' splice site by U4/U6.U5 tri-snRNP defines a novel ATP-dependent step in early spliceosome assembly.

Authors:  P A Maroney; C M Romfo; T W Nilsen
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

2.  Multiple functional domains of human U2 small nuclear RNA: strengthening conserved stem I can block splicing.

Authors:  J Wu; J L Manley
Journal:  Mol Cell Biol       Date:  1992-12       Impact factor: 4.272

3.  Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP.

Authors:  J D Crispino; B J Blencowe; P A Sharp
Journal:  Science       Date:  1994-09-23       Impact factor: 47.728

4.  The prespliceosome components SAP 49 and SAP 145 interact in a complex implicated in tethering U2 snRNP to the branch site.

Authors:  P Champion-Arnaud; R Reed
Journal:  Genes Dev       Date:  1994-08-15       Impact factor: 11.361

5.  Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly.

Authors:  Guowei Wu; Hironori Adachi; Junhui Ge; David Stephenson; Charles C Query; Yi-Tao Yu
Journal:  EMBO J       Date:  2016-02-12       Impact factor: 11.598

6.  Alternative spliceosome assembly pathways revealed by single-molecule fluorescence microscopy.

Authors:  Inna Shcherbakova; Aaron A Hoskins; Larry J Friedman; Victor Serebrov; Ivan R Corrêa; Ming-Qun Xu; Jeff Gelles; Melissa J Moore
Journal:  Cell Rep       Date:  2013-09-26       Impact factor: 9.423

7.  U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs.

Authors:  M Ares
Journal:  Cell       Date:  1986-10-10       Impact factor: 41.582

8.  Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae.

Authors:  S E Wells; M Ares
Journal:  Mol Cell Biol       Date:  1994-09       Impact factor: 4.272

9.  U2 snRNP binds intronless histone pre-mRNAs to facilitate U7-snRNP-dependent 3' end formation.

Authors:  Kyle Friend; Alexander F Lovejoy; Joan A Steitz
Journal:  Mol Cell       Date:  2007-10-26       Impact factor: 17.970

10.  Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.

Authors:  Daniel A Pomeranz Krummel; Chris Oubridge; Adelaine K W Leung; Jade Li; Kiyoshi Nagai
Journal:  Nature       Date:  2009-03-26       Impact factor: 49.962

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  12 in total

1.  LncRNA Pnky Positively Regulates Neural Stem Cell Migration by Modulating mRNA Splicing and Export of Target Genes.

Authors:  Jiannan Du; Yuan Li; Yuting Su; Wenqian Zhi; Jiale Zhang; Cheng Zhang; Juan Wang; Wensheng Deng; Shasha Zhao
Journal:  Cell Mol Neurobiol       Date:  2022-06-24       Impact factor: 5.046

2.  Phylogeny and conservation of plant U2A/U2A', a core splicing component in U2 spliceosomal complex.

Authors:  Yue Liu; Yuan Tian; Lan-Xiang Wang; Tao Fan; Jianhua Zhang; Mo-Xian Chen; Ying-Gao Liu
Journal:  Planta       Date:  2021-12-23       Impact factor: 4.116

3.  Spliceosomal Protein Gene BmSPX Regulates Reproductive Organ Development in Bombyx mori.

Authors:  Yao Wang; Juan Li; Qiu-Xing Wan; Qin Zhao; Kai-Xuan Wang; Xing-Fu Zha
Journal:  Int J Mol Sci       Date:  2020-04-08       Impact factor: 5.923

4.  Impact of cancer-associated mutations in Hsh155/SF3b1 HEAT repeats 9-12 on pre-mRNA splicing in Saccharomyces cerevisiae.

Authors:  Harpreet Kaur; Brent Groubert; Joshua C Paulson; Sarah McMillan; Aaron A Hoskins
Journal:  PLoS One       Date:  2020-04-22       Impact factor: 3.240

Review 5.  The SF3b complex: splicing and beyond.

Authors:  Chengfu Sun
Journal:  Cell Mol Life Sci       Date:  2020-03-05       Impact factor: 9.261

6.  Saccharomyces cerevisiae Ecm2 Modulates the Catalytic Steps of pre-mRNA Splicing.

Authors:  Clarisse van der Feltz; Brandon Nikolai; Charles Schneider; Joshua C Paulson; Xingyang Fu; Aaron A Hoskins
Journal:  RNA       Date:  2021-02-05       Impact factor: 4.942

7.  Rewards of divergence in sequences, 3-D structures and dynamics of yeast and human spliceosome SF3b complexes.

Authors:  Arangasamy Yazhini; Sankaran Sandhya; Narayanaswamy Srinivasan
Journal:  Curr Res Struct Biol       Date:  2021-06-15

8.  Nuclear speckle specific hnRNP D-like prevents age- and AD-related cognitive decline by modulating RNA splicing.

Authors:  Qingyang Zhang; Juan Zhang; Jin Ye; Xiaohui Li; Hongda Liu; Xiaolin Ma; Chao Wang; Keqiang He; Wei Zhang; Ji Yuan; Yingjun Zhao; Huaxi Xu; Qiang Liu
Journal:  Mol Neurodegener       Date:  2021-09-22       Impact factor: 14.195

9.  PanCancer analysis of somatic mutations in repetitive regions reveals recurrent mutations in snRNA U2.

Authors:  Pablo Bousquets-Muñoz; Ander Díaz-Navarro; Ferran Nadeu; Ana Sánchez-Pitiot; Sara López-Tamargo; Shimin Shuai; Milagros Balbín; Jose M C Tubio; Sílvia Beà; Jose I Martin-Subero; Ana Gutiérrez-Fernández; Lincoln D Stein; Elías Campo; Xose S Puente
Journal:  NPJ Genom Med       Date:  2022-03-14       Impact factor: 6.083

10.  Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.

Authors:  Constantin Cretu; Patricia Gee; Xiang Liu; Anant Agrawal; Tuong-Vi Nguyen; Arun K Ghosh; Andrew Cook; Melissa Jurica; Nicholas A Larsen; Vladimir Pena
Journal:  Nat Commun       Date:  2021-07-23       Impact factor: 14.919

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