| Literature DB >> 30758075 |
Tangyuheng Liu1, Jiajia Song1, Mei Zhang1, Siyue Li1, Jinya Zhang1, Xuejiao Hu1, Zhenzhen Zhao1, Wu Peng1, Qian Wu1, Hao Bai1, Yinyu Li2, Xiaojun Lu1, Binwu Ying1.
Abstract
BACKGROUND: We investigated the relationship between hepatitis B virus (HBV)-related pathogenesis and single nucleotide polymorphisms (SNPs) in interleukin-21 (IL-21)-JAK-STAT signaling pathway genes.Entities:
Keywords: IL-21; IL-21R; JAK/STAT; hepatitis B virus; hepatocellular carcinoma; single nucleotide polymorphism
Mesh:
Substances:
Year: 2019 PMID: 30758075 PMCID: PMC6595330 DOI: 10.1002/jcla.22860
Source DB: PubMed Journal: J Clin Lab Anal ISSN: 0887-8013 Impact factor: 2.352
Basic characteristics of patients and controls
| Groups | n | Males/females |
| Age |
|
|---|---|---|---|---|---|
| Patients | 546 | 388/158 (2.46) | 0.60 | 41.05 ± 13.65 | 0.40 |
| CHB | 302 | 218/84 (2.60) | 0.44 | 40.40 ± 11.22 | 0.79 |
| Cirrhosis | 115 | 85/30 (2.83) | 0.36 | 41.69 ± 12.12 | 0.50 |
| HCC | 129 | 100/29 (6.59) | 0.08 | 44.76 ± 13.30 | 0.60 |
| Controls | 353 | 245/108 (2.27) | 41.05 ± 13.65 |
Patients vs Controls.
CHB vs Controls.
Cirrhosis vs Controls.
HCC vs Controls.
The results of HWE analyses for the genotypes of five SNPs
| Groups | n |
| ||||
|---|---|---|---|---|---|---|
| rs2221903 | rs4833837 | rs2285452 | rs1053023 | rs3008 | ||
| Controls | 353 | 0.503 | 0.850 | 0.191 | 0.533 | 0.160 |
| Patients | 546 | 0.954 | 0.873 | 1.60e−6 | 0.544 | 0.546 |
| CHB | 302 | 0.909 | 0.182 | 0.002 | 0.211 | 0.822 |
| Cirrhosis | 115 | 0.148 | 0.054 | 0.599 | 0.413 | 0.920 |
| HCC | 129 | 0.075 | 0.832 | 1.94e−8 | 0.693 | 0.368 |
Comparison of genotype and allele frequencies between patient and control groups
| Gene | SNP | Group | Allele | Allele n (%) | OR (95% CI) |
| Genotype n (%) |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 1 | 2 | 11 | 12 | 22 | ||||||
| IL‐21 | rs2221903 | Patient | A | G | 961 (88.00) | 131 (12.00) | 0.86 [0.40‐1.82] | 0.67 | 423 (77.47) | 115 (21.06) | 8 (1.47) | 0.83 |
| Control | 619 (87.68) | 87 (12.32) | 270 (76.49) | 79 (22.38) | 4 (1.13) | |||||||
| IL‐21 | rs4833837 | Patient | A | G | 965 (88.37) | 127 (11.63) | 1.31 [0.61‐2.77] | 0.49 | 426 (78.02) | 113 (20.70) | 7 (1.28) | 0.80 |
| Control | 617 (87.39) | 89 (12.61) | 270 (76.49) | 77 (21.81) | 6 (1.70) | |||||||
| IL‐21R | rs2285452 | Patient | A | G | 117 (10.71) | 975 (89.29) | 0.93 [0.68‐1.29] | 0.68 | 17 (3.11) | 83 (15.20) | 446 (81.69) | 0.25 |
| Control | 80 (11.33) | 626 (88.67) | 7 (1.98) | 66 (18.70) | 280 (79.32) | |||||||
| STAT3 | rs1053023 | Patient | A | G | 742 (67.95) | 350 (32.05) | 1.01 [0.77‐1.31] | 0.96 | 249 (45.60) | 244 (44.69) | 53 (9.71) | 1.00 |
| Control | 482 (68.27) | 224 (31.73) | 162 (45.89) | 158 (44.76) | 33 (9.35) | |||||||
| JAK3 | rs3008 | Patient | T | C | 489 (44.78) | 603 (55.22) | 1.08 [0.85‐1.37] | 0.54 | 163 (29.86) | 277 (50.73) | 106 (19.41) | 0.32 |
| Control | 395 (55.95) | 311 (44.05) | 117 (33.14) | 161 (45.61) | 75 (21.25) | |||||||
CI, confidence interval; OR, odds ratio; SNP, single nucleotide polymorphism.
Analysis of IL‐21‐JAK/STAT signaling pathway polymorphisms relevant to the risk of infecting with hepatitis B virus between patient and control groups
| Group | Gene | SNP | Additive model | Recessive model | Dominant model | |||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |||
| Patient vs Control | IL‐21 | rs2221903A>G | 0.97 [0.73‐1.30] | 0.86 | 0.77 [0.23‐2.58] | 0.77 | 1.06 [0.77‐1.45] | 0.73 |
| IL‐21 | rs4833837A>G | 0.91 [0.68‐1.22] | 0.53 | 1.33 [0.40‐4.00] | 0.61 | 1.09 [0.79‐1.50] | 0.59 | |
| IL‐21R | rs2285452G>A | 1.10 [0.98‐1.40] | 0.70 | 0.86 [0.61‐1.20] | 0.38 | 1.59 [0.65‐3.87] | 0.30 | |
| STAT3 | rs1053023A>G | 1.02 [0.83‐1.25] | 0.88 | 0.96 [0.61‐1.52] | 0.86 | 0.99 [0.76‐1.29] | 0.93 | |
| JAK3 | rs3008C>T | 1.03 [0.85‐1.24] | 0.76 | 1.12 [0.80‐1.56] | 0.50 | 0.86 [0.64‐1.14] | 0.30 | |
Comparison of genotype and allele frequencies between CHB and control groups
| Gene | SNP | Group | Allele | Allele n (%) | OR (95% CI) |
| Genotype n (%) |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 1 | 2 | 11 | 12 | 22 | ||||||
| IL‐21 | rs2221903 | CHB | A | G | 542 (89.74) | 62 (10.26) | 1.23 [0.87‐1.74] | 0.24 | 234 (80.47) | 56 (18.54) | 3 (0.99) | 0.47 |
| Control | 238 (24.33) | 87 (12.32) | 270 (76.49) | 79 (22.38) | 4 (1.13) | |||||||
| IL‐21 | rs4833837 | CHB | A | G | 537 (88.91) | 67 (11.09) | 1.16 [0.83‐1.62] | 0.40 | 241 (79.80) | 55 (18.21) | 6 (1.99) | 0.51 |
| Control | 617 (87.39) | 89 (12.61) | 270 (76.49) | 77 (21.81) | 6 (1.70) | |||||||
| IL‐21R | rs2285452 | CHB | A | G | 61 (10.10) | 543 (89.90) | 0.88 [0.62‐1.25] | 0.47 | 8 (2.65) | 45 (14.90) | 249 (82.45) | 0.39 |
| Control | 80 (11.33) | 626 (88.67) | 7 (1.98) | 66 (18.70) | 280 (79.32) | |||||||
| STAT3 | rs1053023 | CHB | A | G | 425 (70.36) | 179 (29.64) | 1.10 [0.87‐1.40] | 0.41 | 145 (48.01) | 135 (44.70) | 22 (7.29) | 0.61 |
| Control | 482 (68.27) | 224 (31.73) | 162 (45.89) | 158 (44.76) | 33 (9.35) | |||||||
| JAK3 | rs3008 | CHB | T | C | 344 (56.95) | 260 (43.05) | 0.96 [0.77‐1.20] | 0.72 | 97 (32.12) | 150 (49.67) | 55 (18.21) | 0.50 |
| Control | 395 (55.95) | 311 (44.05) | 117 (33.14) | 161 (45.61) | 75 (21.25) | |||||||
CI, confidence interval; OR, odds ratio; SNP, single nucleotide polymorphism.
Comparison of genotype and allele frequencies between HBV‐related LC and control groups
| Gene | SNP | Group | Allele | Allele n (%) | OR (95% CI) |
| Genotype n (%) |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 1 | 2 | 11 | 12 | 22 | ||||||
| IL‐21 | rs2221903 | Cirrhosis | A | G | 192 (83.48) | 38 (16.52) | 0.48 [0.15‐1.55] | 0.22 | 78 (67.83) | 36 (31.30) | 1 (0.87) | 0.15 |
| Control | 619 (87.68) | 87 (12.32) | 270 (76.49) | 79 (22.38) | 4 (1.13) | |||||||
| IL‐21 | rs4833837 | Cirrhosis | A | G | 195 (84.78) | 35 (15.22) | 1.70 [0.52‐5.57] | 0.38 | 80 (69.57) | 35 (30.43) | — | 0.07 |
| Control | 617 (87.39) | 89 (12.61) | 270 (76.49) | 77 (21.81) | 6 (1.70) | |||||||
| IL‐21R | rs2285452 | Cirrhosis | A | G | 27 (11.74) | 203 (88.26) | 1.16 [0.68‐1.97] | 0.60 | 1 (0.87) | 25 (21.74) | 89 (77.39) | 0.58 |
| Control | 80 (11.33) | 626 (88.67) | 7 (1.98) | 66 (18.70) | 280 (79.32) | |||||||
| STAT3 | rs1053023 | Cirrhosis | A | G | 147 (63.91) | 83 (36.09) | 0.95 [0.62‐1.46] | 0.83 | 49 (42.61) | 49 (42.61) | 17 (14.78) | 0.26 |
| Control | 482 (68.27) | 224 (31.73) | 162 (45.89) | 158 (44.76) | 33 (9.35) | |||||||
| JAK3 | rs3008 | Cirrhosis | T | C | 118 (51.30) | 112 (48.70) | 1.28 [0.86‐1.92] | 0.23 | 30 (26.09) | 58 (50.43) | 27 (23.48) | 0.37 |
| Control | 395 (55.95) | 311 (44.05) | 117 (33.14) | 161 (45.61) | 75 (21.25) | |||||||
CI, confidence interval; OR, odds ratio; SNP, single nucleotide polymorphism.
Comparison of genotype and allele frequencies between HBV‐related HCC and control groups
| Gene | SNP | Group | Allele | Allele n (%) | OR (95% CI) |
| Genotype n (%) |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 1 | 2 | 11 | 12 | 22 | ||||||
| IL‐21 | rs2221903 | HCC | A | G | 227 (87.98) | 31 (12.02) | 0.43 [0.13‐1.45] | 0.17 | 102 (79.07) | 23 (17.83) | 4 (3.01) | 0.20 |
| Control | 619 (87.68) | 87 (12.32) | 270 (76.49) | 79 (22.38) | 4 (1.13) | |||||||
| IL‐21 | rs4833837 | HCC | A | G | 233 (90.31) | 25 (9.69) | 2.95 [0.85‐10.25] | 0.09 | 105 (81.40) | 23 (17.83) | 1 (0.77) | 0.46 |
| Control | 617 (87.39) | 89 (12.61) | 270 (76.49) | 77 (21.81) | 6 (1.70) | |||||||
| IL‐21R | rs2285452 | HCC | A | G | 29 (11.24) | 229 (88.76) | 1.34 [0.78‐2.30] | 0.30 | 8 (6.02) | 13 (10.08) | 108 (83.72) |
|
| Control | 80 (11.33) | 626 (88.67) | 7 (1.98) | 66 (18.70) | 280 (79.32) | |||||||
| STAT3 | rs1053023 | HCC | A | G | 170 (65.89) | 88 (34.11) | 0.74 [0.47‐1.17] | 0.20 | 55 (42.64) | 60 (46.51) | 14 (10.85) | 0.78 |
| Control | 482 (68.27) | 224 (31.73) | 162 (45.89) | 158 (44.76) | 33 (9.35) | |||||||
| JAK3 | rs3008 | HCC | T | C | 141 (54.65) | 117 (43.35) | 1.14 [0.74‐1.75] | 0.55 | 24 (18.60) | 69 (53.49) | 36 (27.91) | 0.31 |
| Control | 395 (55.95) | 311 (44.05) | 75 (21.25) | 161 (45.61) | 117 (33.14) | |||||||
CI, confidence interval; OR, odds ratio; SNP, single nucleotide polymorphism. Bold value indicate P < 0.05.
Association between IL‐21‐JAK/STAT signaling pathway polymorphisms and the risk of infecting with hepatitis B virus between patient subgroups and control groups
| Group | Gene | SNP | Additive model | Recessive model | Dominant model | |||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |||
| CHB vs Control | IL‐21 | rs2221903A>G | 0.84 [0.59‐1.20] | 0.32 | 1.11 [0.25‐5.00] | 1.00 | 1.22 [0.84‐1.78] | 0.30 |
| IL‐21 | rs4833837A>G | 0.87 [0.62‐1.21] | 0.41 | 0.85 [0.27‐2.67] | 0.79 | 1.22 [0.84‐1.76] | 0.31 | |
| IL‐21R | rs2285452G>A | 1.12 [0.80‐1.57] | 0.50 | 0.82 [0.55‐1.21] | 0.31 | 1.35 [0.48‐3.75] | 0.57 | |
| STAT3 | rs1053023A>G | 0.90 [0.71‐1.15] | 0.40 | 1.31 [0.75‐2.30] | 0.34 | 1.10 [0.81‐1.49] | 0.57 | |
| JAK3 | rs3008C>T | 0.96 [0.78‐1.20] | 0.72 | 1.21 [0.82‐1.79] | 0.33 | 0.95 [0.69‐1.33] | 0.78 | |
| Cirrhosis vs Control | IL‐21 | rs2221903A>G | 1.16 [0.28‐10.49] | 0.10 | 1.31 [0.15‐11.81] | 1.00 | 0.65 [0.84‐1.78] | 0.07 |
| IL‐21 | rs4833837A>G | 1.26 [0.82‐1.94] | 0.30 | 1.01 [1.00‐1.03] | 0.34 | 0.70 [0.44‐1.12] | 0.14 | |
| IL‐21R | rs2285452G>A | 0.96 [0.61‐1.51] | 0.87 | 1.21 [0.68‐1.86] | 0.66 | 0.43 [0.05‐3.56] | 0.67 | |
| STAT3 | rs1053023A>G | 1.22 [0.89‐1.66] | 0.22 | 0.59 [0.32‐1.11] | 0.10 | 0.88 [0.57‐1.34] | 0.54 | |
| JAK3 | rs3008C>T | 1.19 [0.89‐1.60] | 0.23 | 0.88 [0.53‐1.45] | 0.62 | 0.71 [0.44‐1.14] | 0.16 | |
| HCC vs Control | IL‐21 | rs2221903A>G | 0.97 [0.63‐1.50] | 0.90 | 0.36 [0.09‐1.45] | 0.22 | 1.16 [0.71‐1.90] | 0.55 |
| IL‐21 | rs4833837A>G | 0.72 [0.45‐1.16] | 0.17 | 2.21 [0.26‐18.56] | 0.68 | 1.35 [0.81‐2.23] | 0.27 | |
| IL‐21R | rs2285452G>A | 1.00 [0.67‐1.53] | 0.97 | 3.27 [1.16‐9.20] |
| 0.75 [0.44‐1.27] | 0.28 | |
| STAT3 | rs1053023A>G | 1.12 [0.82‐1.52] | 0.48 | 0.85 [0.44‐1.64] | 0.62 | 1.14 [0.76‐1.71] | 0.53 | |
| JAK3 | rs3008C>T | 0.95 [0.71‐1.26] | 0.72 | 1.28 [0.82‐2.00] | 0.27 | 0.85 [0.51‐1.41] | 0.53 | |
CI, confidence interval; OR, odds ratio; SNP, single nucleotide polymorphism. Bold value indicate P < 0.05.
Primer sequences of the target SNPs
| Gene | SNPs | Primer | Length | |
|---|---|---|---|---|
|
| rs2221903 | A/G | F:5′‐AGACACAGCTCTGCTGCTTG‐3′ | 116 |
| R:5′‐CACTGACGCCCATATTGATG‐3′ | ||||
| rs4833837 | A/G | F:5′‐TTTGTGGAAGGTGGTTTCCT‐3′ | 120 | |
| R:5′‐TGAGTGGTCAGCTTTTTCCTG‐3′ | ||||
|
| rs2285452 | G/A | F:5′‐CTGGGATAATGCCCATGGTA‐3′ | 126 |
| R:5′‐ACGGCTGTTGTCATCTGTTG‐3′ | ||||
|
| rs3008 | T/C | F:5′‐GGCCTTATGAGGGTCCTCTACT‐3′ | 122 |
| R:5′‐ATGCCCATCTGTCTTGAACC‐3′ | ||||
|
| rs1053023 | A/G | F:5′‐AGGGCTTCTCTGGAGCAGAT‐3′ | 135 |
| R:5′‐GCCTGAGGACCCTGTTCTTT‐3′ |