Literature DB >> 30755308

Ushering in Integrated T Cell Repertoire Profiling in Cancer.

Ning Jiang1, Alexandra A Schonnesen2, Ke-Yue Ma3.   

Abstract

Advances in immune profiling techniques have dramatically changed the cancer immunotherapy and monitoring landscape. High-throughput protein and gene expression technologies have paved the way for the discovery of therapeutic targets and biomarkers, and have made monitoring therapeutic response possible through the ability to independently assay the phenotype, specificity, exhaustion status, and lineage of single T cells. Although valuable insights into response profiling have been gained with current technologies, it has become evident that single-method profiling is insufficient to accurately capture an antitumor T cell response. We discuss and propose new methods that combine multiple axes of analysis to provide a comprehensive analysis of T cell repertoire in the fight against cancer.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  T cells; high-throughput integrated single T cell profiling; immune checkpoint blockade; immune repertoire

Mesh:

Year:  2018        PMID: 30755308      PMCID: PMC6544389          DOI: 10.1016/j.trecan.2018.11.005

Source DB:  PubMed          Journal:  Trends Cancer        ISSN: 2405-8025


  76 in total

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5.  The kinetics of two-dimensional TCR and pMHC interactions determine T-cell responsiveness.

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Journal:  Nature       Date:  2010-03-31       Impact factor: 49.962

6.  High-throughput sequencing of the zebrafish antibody repertoire.

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Journal:  Science       Date:  2009-05-08       Impact factor: 47.728

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Journal:  Nat Methods       Date:  2009-04-06       Impact factor: 28.547

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Journal:  Sci Transl Med       Date:  2009-12-23       Impact factor: 17.956

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Journal:  Nature       Date:  2010-02-18       Impact factor: 49.962

10.  Simultaneous detection of many T-cell specificities using combinatorial tetramer staining.

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Journal:  Nat Methods       Date:  2009-06-21       Impact factor: 28.547

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Journal:  Oncoimmunology       Date:  2019-07-18       Impact factor: 8.110

2.  AIRR Community Guide to Planning and Performing AIRR-Seq Experiments.

Authors:  Anne Eugster; Magnolia L Bostick; Nidhi Gupta; Encarnita Mariotti-Ferrandiz; Gloria Kraus; Wenzhao Meng; Cinque Soto; Johannes Trück; Ulrik Stervbo; Eline T Luning Prak
Journal:  Methods Mol Biol       Date:  2022

Review 3.  Cancer systems immunology.

Authors:  Nathan E Reticker-Flynn; Edgar G Engleman
Journal:  Elife       Date:  2020-07-13       Impact factor: 8.140

4.  Characteristics, dynamic changes, and prognostic significance of TCR repertoire profiling in patients with renal cell carcinoma.

Authors:  Liping Guo; Xingang Bi; Yajian Li; Li Wen; Wen Zhang; Weixing Jiang; JianHui Ma; Lin Feng; Kaitai Zhang; Jianzhong Shou
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5.  Measuring Intratumoral Heterogeneity of Immune Repertoires.

Authors:  Diana Vladimirovna Yuzhakova; Lilia N Volchkova; Mikhail Valerievich Pogorelyy; Ekaterina O Serebrovskaya; Irina A Shagina; Ekaterina A Bryushkova; Tatiana O Nakonechnaya; Anna V Izosimova; Daria S Zavyalova; Maria M Karabut; Mark Izraelson; Igor V Samoylenko; Vladimir E Zagainov; Dmitriy M Chudakov; Elena V Zagaynova; George Vladimirovich Sharonov
Journal:  Front Oncol       Date:  2020-05-08       Impact factor: 6.244

6.  Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling.

Authors:  Johannes Trück; Anne Eugster; Pierre Barennes; Magnolia Bostick; Encarnita Mariotti-Ferrandiz; Christopher M Tipton; Eline T Luning Prak; Davide Bagnara; Cinque Soto; Jacob S Sherkow; Aimee S Payne; Marie-Paule Lefranc; Andrew Farmer
Journal:  Elife       Date:  2021-05-26       Impact factor: 8.140

7.  Predictive value of TCR Vβ-Jβ profile for adjuvant gefitinib in EGFR mutant NSCLC from ADJUVANT-CTONG 1104 trial.

Authors:  Cunte Chen; Si-Yang Maggie Liu; Yedan Chen; Qiuxiang Ou; Hua Bao; Ling Xu; Yikai Zhang; Wenzhao Zhong; Qing Zhou; Xue-Ning Yang; Yang Shao; Yi-Long Wu; Si-Yang Liu; Yangqiu Li
Journal:  JCI Insight       Date:  2022-01-11

8.  Cyclophosphamide enhances the antitumor potency of GITR engagement by increasing oligoclonal cytotoxic T cell fitness.

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Journal:  JCI Insight       Date:  2021-10-22

Review 9.  Single-cell technologies in hepatology: new insights into liver biology and disease pathogenesis.

Authors:  Prakash Ramachandran; Kylie P Matchett; Ross Dobie; John R Wilson-Kanamori; Neil C Henderson
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10.  VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.

Authors:  Dmitry V Bagaev; Renske M A Vroomans; Jerome Samir; Ulrik Stervbo; Cristina Rius; Garry Dolton; Alexander Greenshields-Watson; Meriem Attaf; Evgeny S Egorov; Ivan V Zvyagin; Nina Babel; David K Cole; Andrew J Godkin; Andrew K Sewell; Can Kesmir; Dmitriy M Chudakov; Fabio Luciani; Mikhail Shugay
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

  10 in total

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