Literature DB >> 30753480

Increased interactivity and improvements to the GigaScience database, GigaDB.

Si Zhe Xiao1, Chris Armit1, Scott Edmunds1, Laurie Goodman1, Peter Li1, Mary Ann Tuli1, Christopher Ian Hunter1.   

Abstract

With a large increase in the volume and type of data archived in GigaScience Database (GigaDB) since its launch in 2011, we have studied the metrics and user patterns to assess the important aspects needed to best suit current and future use. This has led to new front-end developments and enhanced interactivity and functionality that greatly improve user experience. In this article, we present an overview of the current practices including the Biocurational role of the GigaDB staff, the broad usage metrics of GigaDB datasets and an update on how the GigaDB platform has been overhauled and enhanced to improve the stability and functionality of the codebase. Finally, we report on future directions for the GigaDB resource.

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Mesh：

Year:  2019        PMID： 30753480      PMCID： PMC6376146          DOI： 10.1093/database/baz016

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN： 1758-0463            Impact factor:   3.451


  5 in total

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Journal:  Nat Biotechnol       Date:  2014-07-06       Impact factor: 54.908

2.  The minimum information about a genome sequence (MIGS) specification.

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Journal:  Nat Biotechnol       Date:  2008-05       Impact factor: 54.908

3.  A micro X-ray computed tomography dataset of South African hermit crabs (Crustacea: Decapoda: Anomura: Paguroidea) containing scans of two rare specimens and three recently described species.

Authors:  Jannes Landschoff; Anton Du Plessis; Charles L Griffiths
Journal:  Gigascience       Date:  2018-04-01       Impact factor: 6.524

4.  Adventures in data citation: sorghum genome data exemplifies the new gold standard.

Authors:  Scott C Edmunds; Tom J Pollard; Brian Hole; Alexandra T Basford
Journal:  BMC Res Notes       Date:  2012-07-02

5.  GigaDB: promoting data dissemination and reproducibility.

Authors:  Tam P Sneddon; Xiao Si Zhe; Scott C Edmunds; Peter Li; Laurie Goodman; Christopher I Hunter
Journal:  Database (Oxford)       Date:  2014-03-12       Impact factor: 3.451
  5 in total
  3 in total

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Authors:  Chris Armit; Mary Ann Tuli; Christopher I Hunter
Journal:  Gigascience       Date:  2022-06-14       Impact factor: 7.658

2.  The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR.

Authors:  Shuhui Song; Lina Ma; Dong Zou; Dongmei Tian; Cuiping Li; Junwei Zhu; Meili Chen; Anke Wang; Yingke Ma; Mengwei Li; Xufei Teng; Ying Cui; Guangya Duan; Mochen Zhang; Tong Jin; Chengmin Shi; Zhenglin Du; Yadong Zhang; Chuandong Liu; Rujiao Li; Jingyao Zeng; Lili Hao; Shuai Jiang; Hua Chen; Dali Han; Jingfa Xiao; Zhang Zhang; Wenming Zhao; Yongbiao Xue; Yiming Bao
Journal:  Genomics Proteomics Bioinformatics       Date:  2020-12-03       Impact factor: 7.691

3.  InsectBase 2.0: a comprehensive gene resource for insects.

Authors:  Yang Mei; Dong Jing; Shenyang Tang; Xi Chen; Hao Chen; Haonan Duanmu; Yuyang Cong; Mengyao Chen; Xinhai Ye; Hang Zhou; Kang He; Fei Li
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971
  3 in total

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