Literature DB >> 30740972

Stability Effect of Quinary Interactions Reversed by Single Point Mutations.

David Gnutt1,2, Stepan Timr3, Jonas Ahlers2, Benedikt König2, Emily Manderfeld2, Matthias Heyden4, Fabio Sterpone3, Simon Ebbinghaus1,2.   

Abstract

In cells, proteins are embedded in a crowded environment that controls their properties via manifold avenues including weak protein-macromolecule interactions. A molecular level understanding of these quinary interactions and their contribution to protein stability, function, and localization in the cell is central to modern structural biology. Using a mutational analysis to quantify the energetic contributions of single amino acids to the stability of the ALS related protein superoxide dismutase I (SOD1) in mammalian cells, we show that quinary interactions destabilize SOD1 by a similar energetic offset for most of the mutants, but there are notable exceptions: Mutants that alter its surface properties can even lead to a stabilization of the protein in the cell as compared to the test tube. In conclusion, quinary interactions can amplify and even reverse the mutational response of proteins, being a key aspect in pathogenic protein misfolding and aggregation.

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Year:  2019        PMID: 30740972     DOI: 10.1021/jacs.8b13025

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Crowding-Induced Elongated Conformation of Urea-Unfolded Apoazurin: Investigating the Role of Crowder Shape in Silico.

Authors:  Fabio C Zegarra; Dirar Homouz; Andrei G Gasic; Lucas Babel; Michael Kovermann; Pernilla Wittung-Stafshede; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2019-04-23       Impact factor: 2.991

Review 2.  Protein assembly and crowding simulations.

Authors:  Lim Heo; Yuji Sugita; Michael Feig
Journal:  Curr Opin Struct Biol       Date:  2022-02-23       Impact factor: 6.809

3.  In-cell destabilization of a homodimeric protein complex detected by DEER spectroscopy.

Authors:  Yin Yang; Shen-Na Chen; Feng Yang; Xia-Yan Li; Akiva Feintuch; Xun-Cheng Su; Daniella Goldfarb
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-11       Impact factor: 11.205

Review 4.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

5.  Active metabolism unmasks functional protein-protein interactions in real time in-cell NMR.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  Commun Biol       Date:  2020-05-21

6.  Protein Folding Modulation in Cells Subject to Differentiation and Stress.

Authors:  David Gnutt; Linda Sistemich; Simon Ebbinghaus
Journal:  Front Mol Biosci       Date:  2019-05-24

Review 7.  Melting Down Protein Stability: PAPS Synthase 2 in Patients and in a Cellular Environment.

Authors:  Oliver Brylski; Simon Ebbinghaus; Jonathan W Mueller
Journal:  Front Mol Biosci       Date:  2019-05-03

8.  Cellular ATP Levels Determine the Stability of a Nucleotide Kinase.

Authors:  Oliver Brylski; Puja Shrestha; Patricia Gnutt; David Gnutt; Jonathan Wolf Mueller; Simon Ebbinghaus
Journal:  Front Mol Biosci       Date:  2021-12-13

9.  Intact ribosomes drive the formation of protein quinary structure.

Authors:  Leonard Breindel; Jianchao Yu; David S Burz; Alexander Shekhtman
Journal:  PLoS One       Date:  2020-04-24       Impact factor: 3.240

10.  Connecting Longitudinal and Transverse Relaxation Rates in Live-Cell NMR.

Authors:  Sarah Leeb; Fan Yang; Mikael Oliveberg; Jens Danielsson
Journal:  J Phys Chem B       Date:  2020-11-12       Impact factor: 2.991

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