Literature DB >> 30739967

A Powerful Bayesian Test for Equality of Means in High Dimensions.

Roger S Zoh1, Abhra Sarkar2, Raymond J Carroll3, Bani K Mallick4.   

Abstract

We develop a Bayes factor based testing procedure for comparing two population means in high dimensional settings. In 'large-p-small-n' settings, Bayes factors based on proper priors require eliciting a large and complex p×p covariance matrix, whereas Bayes factors based on Jeffrey's prior suffer the same impediment as the classical Hotelling T 2 test statistic as they involve inversion of ill-formed sample covariance matrices. To circumvent this limitation, we propose that the Bayes factor be based on lower dimensional random projections of the high dimensional data vectors. We choose the prior under the alternative to maximize the power of the test for a fixed threshold level, yielding a restricted most powerful Bayesian test (RMPBT). The final test statistic is based on the ensemble of Bayes factors corresponding to multiple replications of randomly projected data. We show that the test is unbiased and, under mild conditions, is also locally consistent. We demonstrate the efficacy of the approach through simulated and real data examples.

Entities:  

Keywords:  Bayes factor; Random projection; Restricted most powerful Bayesian tests; Testing of hypotheses

Year:  2018        PMID: 30739967      PMCID: PMC6364997          DOI: 10.1080/01621459.2017.1371024

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  8 in total

1.  A Two-Sample Test for Equality of Means in High Dimension.

Authors:  Karl Bruce Gregory; Raymond J Carroll; Veerabhadran Baladandayuthapani; Soumendra N Lahiri
Journal:  J Am Stat Assoc       Date:  2015-06-01       Impact factor: 5.033

2.  Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer.

Authors:  Liat Ein-Dor; Or Zuk; Eytan Domany
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

3.  A multivariate two-sample mean test for small sample size and missing data.

Authors:  Yujun Wu; Marc G Genton; Leonard A Stefanski
Journal:  Biometrics       Date:  2006-09       Impact factor: 2.571

4.  Revised standards for statistical evidence.

Authors:  Valen E Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-11       Impact factor: 11.205

5.  UNIFORMLY MOST POWERFUL BAYESIAN TESTS.

Authors:  Valen E Johnson
Journal:  Ann Stat       Date:  2013       Impact factor: 4.028

6.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

7.  A prognostic DNA signature for T1T2 node-negative breast cancer patients.

Authors:  Eléonore Gravier; Gaëlle Pierron; Anne Vincent-Salomon; Nadège Gruel; Virginie Raynal; Alexia Savignoni; Yann De Rycke; Jean-Yves Pierga; Carlo Lucchesi; Fabien Reyal; Alain Fourquet; Sergio Roman-Roman; François Radvanyi; Xavier Sastre-Garau; Bernard Asselain; Olivier Delattre
Journal:  Genes Chromosomes Cancer       Date:  2010-12       Impact factor: 5.006

8.  Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.

Authors:  Davis J McCarthy; Yunshun Chen; Gordon K Smyth
Journal:  Nucleic Acids Res       Date:  2012-01-28       Impact factor: 16.971

  8 in total

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