Literature DB >> 30735982

Learning Cancer-Related Drug Efficacy Exploiting Consensus in Coordinated Motility Within Cell Clusters.

Davide Di Giuseppe, Francesca Corsi, Arianna Mencattini, Maria Colomba Comes, Paola Casti, Corrado Di Natale, Lina Ghibelli, Eugenio Martinelli.   

Abstract

OBJECTIVE: The ability of cells to collectively move is essential in various biological contexts including cancer metastasis. In this paper, we propose an automatic video analysis tool to correlate the cell movement inhibition with replication block induced by dose-dependent chemotherapy administration.
METHODS: The novel approach combines individual and collective cell kinematic analysis performed over time-lapse microscopy video frames. Cells are first localized and tracked, and then kinematic descriptors are extracted for each track. Selective track identification is performed assuming diversified cell roles within the same cluster (spontaneously forming groups of cells), and finally individual results are grouped exploiting consensus of coordinated motility within cell clusters.
RESULTS: Recognition performance of three different experimental conditions (no drug, 0.5-5 μM merged in the same condition, and 50 μM) reached an average accuracy value of 88% over 958 different tracks collected in 36 clusters of diverse dimensions in eight independent experiments.
CONCLUSION: An extensive application of this methodology could give a different point of view of the cancer mechanisms.

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Year:  2019        PMID: 30735982     DOI: 10.1109/TBME.2019.2897825

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  8 in total

1.  Machine learning phenomics (MLP) combining deep learning with time-lapse-microscopy for monitoring colorectal adenocarcinoma cells gene expression and drug-response.

Authors:  M D'Orazio; M Murdocca; A Mencattini; P Casti; J Filippi; G Antonelli; D Di Giuseppe; M C Comes; C Di Natale; F Sangiuolo; E Martinelli
Journal:  Sci Rep       Date:  2022-05-20       Impact factor: 4.996

2.  From Petri Dishes to Organ on Chip Platform: The Increasing Importance of Machine Learning and Image Analysis.

Authors:  Arianna Mencattini; Fabrizio Mattei; Giovanna Schiavoni; Annamaria Gerardino; Luca Businaro; Corrado Di Natale; Eugenio Martinelli
Journal:  Front Pharmacol       Date:  2019-02-26       Impact factor: 5.810

3.  A Camera Sensors-Based System to Study Drug Effects On In Vitro Motility: The Case of PC-3 Prostate Cancer Cells.

Authors:  Maria Colomba Comes; Arianna Mencattini; Davide Di Giuseppe; Joanna Filippi; Michele D'Orazio; Paola Casti; Francesca Corsi; Lina Ghibelli; Corrado Di Natale; Eugenio Martinelli
Journal:  Sensors (Basel)       Date:  2020-03-10       Impact factor: 3.576

4.  Apoptosis mapping in space and time of 3D tumor ecosystems reveals transmissibility of cytotoxic cancer death.

Authors:  Irina Veith; Arianna Mencattini; Valentin Picant; Marco Serra; Marine Leclerc; Maria Colomba Comes; Fathia Mami-Chouaib; Jacques Camonis; Stéphanie Descroix; Hamasseh Shirvani; Fatima Mechta-Grigoriou; Gérard Zalcman; Maria Carla Parrini; Eugenio Martinelli
Journal:  PLoS Comput Biol       Date:  2021-03-30       Impact factor: 4.475

5.  Combining microfluidics with machine learning algorithms for RBC classification in rare hereditary hemolytic anemia.

Authors:  Valeria Rizzuto; Arianna Mencattini; Begoña Álvarez-González; Davide Di Giuseppe; Eugenio Martinelli; David Beneitez-Pastor; Maria Del Mar Mañú-Pereira; Maria José Lopez-Martinez; Josep Samitier
Journal:  Sci Rep       Date:  2021-06-30       Impact factor: 4.379

6.  Deciphering Cancer Cell Behavior From Motility and Shape Features: Peer Prediction and Dynamic Selection to Support Cancer Diagnosis and Therapy.

Authors:  Michele D'Orazio; Francesca Corsi; Arianna Mencattini; Davide Di Giuseppe; Maria Colomba Comes; Paola Casti; Joanna Filippi; Corrado Di Natale; Lina Ghibelli; Eugenio Martinelli
Journal:  Front Oncol       Date:  2020-10-20       Impact factor: 6.244

7.  Accelerating the experimental responses on cell behaviors: a long-term prediction of cell trajectories using Social Generative Adversarial Network.

Authors:  Maria Colomba Comes; J Filippi; A Mencattini; F Corsi; P Casti; A De Ninno; D Di Giuseppe; M D'Orazio; L Ghibelli; F Mattei; G Schiavoni; L Businaro; C Di Natale; E Martinelli
Journal:  Sci Rep       Date:  2020-09-24       Impact factor: 4.379

8.  NeuriTES. Monitoring neurite changes through transfer entropy and semantic segmentation in bright-field time-lapse microscopy.

Authors:  Arianna Mencattini; Alida Spalloni; Paola Casti; Maria Colomba Comes; Davide Di Giuseppe; Gianni Antonelli; Michele D'Orazio; Joanna Filippi; Francesca Corsi; Hervé Isambert; Corrado Di Natale; Patrizia Longone; Eugenio Martinelli
Journal:  Patterns (N Y)       Date:  2021-05-25
  8 in total

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