Literature DB >> 30729087

The draft genome sequence of Clostridium sp. strain CT7, an isolate capable of producing butanol but not acetone and 1,3-propanediol from crude glycerol.

Jiasheng Lu1, Tianpeng Chen1, Yujia Jiang1, Wenming Zhang1,2, Weiliang Dong1,2, Jie Zhou1, Jiangfeng Ma1,2, Yan Fang1,2, Min Jiang1,2, Fengxue Xin1,2.   

Abstract

A solventogenic Clostridium sp. strain CT7 which could utilize glycerol directly to produce high yields of butanol was isolated. In the presence of crude glycerol, strain CT7 synthesized butanol through a unique butanol-ethanol (BE) fermentation pathway in which acetone and 1,3-propanediol (1,3-PDO) were not produced. The genome of strain CT7 which has a G + C content of 30.3% was estimated to be 5.99 Mb and contained 4319 putative Open Reading Frames (ORF). The putative annotated genes, which play major roles in BE production from crude glycerol, included glycerol dehydrogenase gene (gdh), acetoacetyl-CoA transferase gene (ctfA/B), and bifunctional alcohol and aldehyde dehydrogenase gene (adhE). In addition, non-typical BE production is not coupled to 1,3-propanediol formation, which may due to the defect of 1, 3-PDO dehydrogenase gene (dhaT).

Entities:  

Keywords:  AdhE; Butanol; By-products; Clostridium; Draft genome sequencing; Glycerol

Year:  2019        PMID: 30729087      PMCID: PMC6361031          DOI: 10.1007/s13205-019-1598-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  17 in total

1.  Complete genome sequence of Clostridium pasteurianum NRRL B-598, a non-type strain producing butanol.

Authors:  Karel Sedlar; Jan Kolek; Helena Skutkova; Barbora Branska; Ivo Provaznik; Petra Patakova
Journal:  J Biotechnol       Date:  2015-09-26       Impact factor: 3.307

2.  Activation of glycerol metabolic pathway by evolutionary engineering of Rhizopus oryzae to strengthen the fumaric acid biosynthesis from crude glycerol.

Authors:  Di Huang; Ru Wang; Wenjie Du; Guanyi Wang; Menglei Xia
Journal:  Bioresour Technol       Date:  2015-08-01       Impact factor: 9.642

3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

4.  The bifunctional alcohol and aldehyde dehydrogenase gene, adhE, is necessary for ethanol production in Clostridium thermocellum and Thermoanaerobacterium saccharolyticum.

Authors:  Jonathan Lo; Tianyong Zheng; Shuen Hon; Daniel G Olson; Lee R Lynd
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

5.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

6.  Disruption of the acetoacetate decarboxylase gene in solvent-producing Clostridium acetobutylicum increases the butanol ratio.

Authors:  Yu Jiang; Chongmao Xu; Feng Dong; Yunliu Yang; Weihong Jiang; Sheng Yang
Journal:  Metab Eng       Date:  2009-06-26       Impact factor: 9.783

7.  Metabolic engineering of Clostridium tyrobutyricum for n-butanol production: effects of CoA transferase.

Authors:  Le Yu; Jingbo Zhao; Mengmeng Xu; Jie Dong; Saju Varghese; Mingrui Yu; I-Ching Tang; Shang-Tian Yang
Journal:  Appl Microbiol Biotechnol       Date:  2015-04-09       Impact factor: 4.813

Review 8.  Fermentative butanol production by Clostridia.

Authors:  Sang Yup Lee; Jin Hwan Park; Seh Hee Jang; Lars K Nielsen; Jaehyun Kim; Kwang S Jung
Journal:  Biotechnol Bioeng       Date:  2008-10-01       Impact factor: 4.530

9.  Coenzyme A-transferase-independent butyrate re-assimilation in Clostridium acetobutylicum-evidence from a mathematical model.

Authors:  Thomas Millat; Christine Voigt; Holger Janssen; Clare M Cooksley; Klaus Winzer; Nigel P Minton; Hubert Bahl; Ralf-Jörg Fischer; Olaf Wolkenhauer
Journal:  Appl Microbiol Biotechnol       Date:  2014-08-23       Impact factor: 4.813

10.  Effects of supplementary butyrate on butanol production and the metabolic switch in Clostridium beijerinckii NCIMB 8052: genome-wide transcriptional analysis with RNA-Seq.

Authors:  Yi Wang; Xiangzhen Li; Hans P Blaschek
Journal:  Biotechnol Biofuels       Date:  2013-09-27       Impact factor: 6.040

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