| Literature DB >> 30726237 |
Arjun Parthipan1, Imon Banerjee2, Keith Humphreys3,4, Steven M Asch4,5, Catherine Curtin6,7, Ian Carroll8, Tina Hernandez-Boussard2,5,7.
Abstract
Widely-prescribed prodrug opioids (e.g., hydrocodone) require conversion by liver enzyme CYP-2D6 to exert their analgesic effects. The most commonly prescribed antidepressant, selective serotonin reuptake inhibitors (SSRIs), inhibits CYP-2D6 activity and therefore may reduce the effectiveness of prodrug opioids. We used a machine learning approach to identify patients prescribed a combination of SSRIs and prodrug opioids postoperatively and to examine the effect of this combination on postoperative pain control. Using EHR data from an academic medical center, we identified patients receiving surgery over a 9-year period. We developed and validated natural language processing (NLP) algorithms to extract depression-related information (diagnosis, SSRI use, symptoms) from structured and unstructured data elements. The primary outcome was the difference between preoperative pain score and postoperative pain at discharge, 3-week and 8-week time points. We developed computational models to predict the increase or decrease in the postoperative pain across the 3 time points by using the patient's EHR data (e.g. medications, vitals, demographics) captured before surgery. We evaluate the generalizability of the model using 10-fold cross-validation method where the holdout test method is repeated 10 times and mean area-under-the-curve (AUC) is considered as evaluation metrics for the prediction performance. We identified 4,306 surgical patients with symptoms of depression. A total of 14.1% were prescribed both an SSRI and a prodrug opioid, 29.4% were prescribed an SSRI and a non-prodrug opioid, 18.6% were prescribed a prodrug opioid but were not on SSRIs, and 37.5% were prescribed a non-prodrug opioid but were not on SSRIs. Our NLP algorithm identified depression with a F1 score of 0.95 against manual annotation of 300 randomly sampled clinical notes. On average, patients receiving prodrug opioids had lower average pain scores (p<0.05), with the exception of the SSRI+ group at 3-weeks postoperative follow-up. However, SSRI+/Prodrug+ had significantly worse pain control at discharge, 3 and 8-week follow-up (p < .01) compared to SSRI+/Prodrug- patients, whereas there was no difference in pain control among the SSRI- patients by prodrug opioid (p>0.05). The machine learning algorithm accurately predicted the increase or decrease of the discharge, 3-week and 8-week follow-up pain scores when compared to the pre-operative pain score using 10-fold cross validation (mean area under the receiver operating characteristic curve 0.87, 0.81, and 0.69, respectively). Preoperative pain, surgery type, and opioid tolerance were the strongest predictors of postoperative pain control. We provide the first direct clinical evidence that the known ability of SSRIs to inhibit prodrug opioid effectiveness is associated with worse pain control among depressed patients. Current prescribing patterns indicate that prescribers may not account for this interaction when choosing an opioid. The study results imply that prescribers might instead choose direct acting opioids (e.g. oxycodone or morphine) in depressed patients on SSRIs.Entities:
Mesh:
Substances:
Year: 2019 PMID: 30726237 PMCID: PMC6364959 DOI: 10.1371/journal.pone.0210575
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Identification of depressed patients and patients on SSRIs using clinical notes and structured data.
Sample sentences and the corresponding annotations for depression symptoms.
| Text Snippet | Label |
|---|---|
| “major depressive disorder, recurrent episode, moderate” | Affirmed |
| “stress and depression, need to continue medication” | Affirmed |
| “patient stating more depression recently, was at behavioral facility and is now more paranoid” | Affirmed |
| “patient had no preinjury mental health issues or depression” | Negated |
| “anxiety was situational, currently no symptoms of depression” | Negated |
Baseline patient characteristics stratified by SSRI and prodrug opioid prescription, 2009–2017.
| Characteristic | Total Cohort | SSRI+ | SSRI- | |||||
|---|---|---|---|---|---|---|---|---|
| Prodrug+ | Prodrug- | p-value | Prodrug+ | Prodrug- | p-value | |||
| 4306 (100) | 606 (14.07) | 1285 (29.84) | 802 (18.63) | 1613 (37.46) | 0.4196 | |||
| 58.34 (14.88) | 57.68 (15.06) | 59.49 (14.76) | 0.0132 | 57.71 (15.23) | 57.99 (14.67) | 0.6680 | ||
| Male | 1164 | 149 (24.59) | 353 (27.47) | 0.1852 | 208 (25.94) | 454 (28.15) | 0.2513 | |
| Female | 3142 | 457 (75.41) | 932 (72.53) | 594 (74.06) | 1159 (71.85) | |||
| White | 2969 | 412 (67.99) | 928 (72.22) | 0.4177 | 523 (65.21) | 1106 (68.57) | 0.3848 | |
| Black | 134 | 16 (2.64) | 32 (2.49) | 31 (3.87) | 55 (3.41) | |||
| Hispanic | 570 | 79 (13.04) | 151 (11.75) | 118 (14.71) | 222 (13.76) | |||
| Asian | 254 | 34 (5.61) | 62 (4.82) | 62 (7.73) | 96 (5.95) | |||
| Other | 379 | 65 (10.73) | 112 (8.72) | 68 (8.48) | 134 (8.31) | |||
| Married/ Life Partner | 2420 (56.20) | 348 (57.43) | 723 (56.26) | 0.6345 | 442 (55.11) | 907 (56.23) | 0.6022 | |
| Single | 1886 (43.80) | 258 (42.57) | 562 (43.74) | 360 (44.89) | 706 (43.77) | |||
| 28.47 (7.39) | 28.16 (7.20) | 28.97 (7.28) | 0.0234 | 27.90 (6.90) | 28.48 (7.75) | 0.0702 | ||
| Private | 1372 (31.86) | 184 (30.36) | 363 (28.25) | 0.1427 | 269 (33.54) | 556 (34.47) | 0.5974 | |
| Medicaid | 502 (11.66) | 81 (13.37) | 152 (11.83) | 97 (12.09) | 172 (10.66) | |||
| Medicare | 2057 (47.77) | 280 (46.20) | 664 (51.67) | 362 (45.14) | 751 (46.56) | |||
| Other | 375 (8.71) | 61 (10.07) | 106 (8.25) | 74 (9.23) | 134 (8.31) | |||
| 0–2 | 3775 (87.67) | 532 (87.79) | 1136 (88.40) | 0.1502 | 690 (86.03) | 1417 (87.85) | 0.2082 | |
| 3+ | 531 (12.33) | 74 (12.21) | 149 (11.60) | 112 (13.97) | 196 (12.15) | |||
**Single/Widowed/ Divorced/ Separated
Clinical characteristics stratified by SSRI use and prodrug prescription, 2009–2017.
| Characteristic | Total Cohort | SSRI+ | SSRI- | |||||
|---|---|---|---|---|---|---|---|---|
| Prodrug+ | Prodrug- | p-value | Prodrug+ | Prodrug- | p-value | |||
| Yes | 1836 (42.64) | 282 (46.53) | 566 (46.05) | 0.3100 | 343 (42.77) | 645 (39.99) | 0.1906 | |
| No | 2470 (57.36) | 324 (53.47) | 719 (55.95) | 459 (57.23) | 968 (60.01) | |||
| 61.91 (56.96) | 61.52 (56.21) | 63.94 (54.10) | 0.1634 | 56.60 (62.43) | 63.14 (56.49) | 0.01431 | ||
| 3326 | 472 | 994 | 615 | 1245 | ||||
| 2.62 (3.07) | 2.29 (2.92) | 2.93 (3.22) | 0.0003 | 2.22 (2.88) | 2.70 (3.05) | 0.0009 | ||
| 4189 | 596 | 1239 | 791 | 1563 | ||||
| 2.99 (2.24) | 2.96 (2.07) | 3.07 (2.32) | 0.3718 | 2.66 (2.01) | 3.12 (2.32) | < .0001 | ||
| 4030 | 568 | 1221 | 737 | 1504 | ||||
| 4.58 (2.39) | 4.76 (2.40) | 4.56 (2.33) | 0.1028 | 4.29 (2.42) | 4.68 (2.40) | 0.0003 | ||
| 2682 | 379 | 841 | 458 | 1004 | ||||
| 3.11 (3.01) | 2.99 (3.18) | 3.21 (2.99) | 0.2434 | 2.84 (2.84) | 3.19 (3.02) | 0.0368 | ||
*Numeric rating score, scale 0–10
Mean change in pain score, stratified by SSRI medication and opioid prodrug prescription*.
| Time Period | Total Cohort | SSRI+ | SSRI- | ||||
|---|---|---|---|---|---|---|---|
| Prodrug+ | Prodrug- | P-value | Prodrug+ | Prodrug- | P-Value | ||
| 0.434 | 0.720 (3.15), | 0.161 (3.29), | 0.0022 | 0.492 (3.16), | 0.511 (3.20), | 0.9060 | |
| 2.080 | 2.774 (3.22), | 1.658 (3.38), | < .0001 | 2.138 (3.18), | 2.126 (3.17), | 0.9430 | |
| 0.604 | 0.861 (3.89), | 0.215 (3.89), | 0.0133 | 0.798 (3.45), | 0.744 (3.44), | 0.7939 | |
*Mean Change in Pain Score is the difference in the postoperative pain score minus the preoperative pain score, smaller values are greater improvement
Comparison of the performance of the models using area under the curve (AUC) of ROC.
| Classifier | Regressor | |||
|---|---|---|---|---|
| Model | Support Vector Classifier | Random Forest Classifier | Random Forest regressor | Elastic Net |
| 0.58 (+/-0.08) | 0.81 (+/-0.02) | 0.82 (+/-0.02) | 0.87 (+/-0.02) | |
| 0.53 (+/-0.11) | 0.82 (+/-0.07) | 0.75 (+/-0.03) | 0.81 (+/-0.05) | |
| 0.52 (+/-0.08) | 0.66 (0+/-.01) | 0.66 (+/-0.03) | 0.69 (+/-0.02) | |
Fig 2Receiver operator characteristic (ROC) curves for the model’s performance with 10-fold cross validation at three postoperative time-points.
(A) ROC-AUC for prediction of pain score change at discharge. (B) ROC-AUC for prediction of pain score change at 3 weeks. (C) ROC-AUC for prediction of pain score change at 8 weeks.
Fig 3Discriminative features selected by the three models: Coefficients computed by the ElasticNet models are represented as weights.
(A) discharge postoperative pain score predictions. (B) 3-week postoperative pain score predictions. (C) 8-week postoperative pain score predictions.