Literature DB >> 30724727

Pectobacterium aquaticum sp. nov., isolated from waterways.

Jacques Pédron1, Claire Bertrand1, Géraldine Taghouti2, Perrine Portier2, Marie-Anne Barny1.   

Abstract

This work aimed to establish the taxonomic status of six strains (A212-S19-A16T, A127-S21-F16, A105-S21-F16, A104-S21-F16, A101-S19-F16 and A35-S23-M15) isolated from three different waterways in 2015 and 2016 in south-east France. Amplification and sequencing of the gapA housekeeping gene clustered these six strains together inside the genus Pectobacterium outside of already described or proposed Pectobacterium species and supspecies. Phenotypic analysis, using GENIII Biolog plates performed with strains A212-S19-A16T, A105-S21-F16, A101-S19-F16 and the closely related Pectobacterium polaris(CFBP 1403), Pectobacterium carotovorum subsp. odoriferum (CFBP 1878T), 'Pectobacteriumcarotovorum subsp. actinidiae' (CFBP 7370), Pectobacterium carotovorum subsp. carotovorum (CFBP 2046T), 'Pectobacterium carotovorum subsp. brasiliense' (CFBP 6617) or the most distantly related Pectobacteriumaroidearum (CFBP 8168T) failed to identify specific compounds metabolized by these three strains, but weak activity was specifically observed at pH 5 with these three strains. Illumina sequencing was used to sequence these six strains. Based on phylogenetic data, average nucleotide identity values and in silico DNA-DNA hybridization results, strains A212-S19-A16T, A127-S21-F16, A105-S21-F16, A101-S19-F16, A35-S23-M15 and A104-S21-F16 are suggested to represent a novel species of the genus Pectobacterium, for which the name Pectobacterium aquaticum sp. nov. is proposed. The type strain is A212-S19-A16 T (=CFBP 8637T=NCPPB 4640T).

Entities:  

Keywords:  ecology; pectobacterium; river

Mesh：

Substances：

Year:  2019        PMID： 30724727     DOI： 10.1099/ijsem.0.003229

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN： 1466-5026            Impact factor:   2.747


  13 in total

1.  Isolation and Genome Analysis of Pectobacterium colocasium sp. nov. and Pectobacterium aroidearum, Two New Pathogens of Taro.

Authors:  Jianuan Zhou; Ming Hu; Anqun Hu; Chuhao Li; Xinyue Ren; Min Tao; Yang Xue; Shanshan Chen; Chongzhi Tang; Yiwu Xu; Lianhui Zhang; Xiaofan Zhou
Journal:  Front Plant Sci       Date:  2022-04-26       Impact factor: 6.627

2.  Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence.

Authors:  Miia Pasanen; Malgorzata Waleron; Thomas Schott; Ilse Cleenwerck; Agnieszka Misztak; Krzysztof Waleron; Leighton Pritchard; Ramadan Bakr; Yeshitila Degefu; Jan van der Wolf; Peter Vandamme; Minna Pirhonen
Journal:  Int J Syst Evol Microbiol       Date:  2020-02-20       Impact factor: 2.747

3.  Autographivirinae Bacteriophage Arno 160 Infects Pectobacterium carotovorum via Depolymerization of the Bacterial O-Polysaccharide.

Authors:  Mikhail M Shneider; Anna A Lukianova; Peter V Evseev; Anna M Shpirt; Marsel R Kabilov; Anna D Tokmakova; Kirill K Miroshnikov; Ekaterina A Obraztsova; Olga A Baturina; Alexander S Shashkov; Alexander N Ignatov; Yuriy A Knirel; Konstantin A Miroshnikov
Journal:  Int J Mol Sci       Date:  2020-04-30       Impact factor: 5.923

4.  Morphologically Different Pectobacterium brasiliense Bacteriophages PP99 and PP101: Deacetylation of O-Polysaccharide by the Tail Spike Protein of Phage PP99 Accompanies the Infection.

Authors:  Anna A Lukianova; Mikhail M Shneider; Peter V Evseev; Anna M Shpirt; Eugenia N Bugaeva; Anastasia P Kabanova; Ekaterina A Obraztsova; Kirill K Miroshnikov; Sofiya N Senchenkova; Alexander S Shashkov; Stepan V Toschakov; Yuriy A Knirel; Alexander N Ignatov; Konstantin A Miroshnikov
Journal:  Front Microbiol       Date:  2020-01-23       Impact factor: 5.640

5.  Comparison of Environmental and Culture-Derived Bacterial Communities through 16S Metabarcoding: A Powerful Tool to Assess Media Selectivity and Detect Rare Taxa.

Authors:  Jacques Pédron; Léa Guyon; Amandine Lecomte; Lydie Blottière; Charlotte Chandeysson; Emma Rochelle-Newall; Xavier Raynaud; Odile Berge; Marie-Anne Barny
Journal:  Microorganisms       Date:  2020-07-27

Review 6.  Pectobacterium brasiliense: Genomics, Host Range and Disease Management.

Authors:  Said Oulghazi; Sohaib Sarfraz; Maja A Zaczek-Moczydłowska; Slimane Khayi; Abdelaziz Ed-Dra; Yassir Lekbach; Katrina Campbell; Lucy Novungayo Moleleki; Richard O'Hanlon; Denis Faure
Journal:  Microorganisms       Date:  2021-01-05

7.  The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool.

Authors:  Eef M Jonkheer; Balázs Brankovics; Ilse M Houwers; Jan M van der Wolf; Peter J M Bonants; Robert A M Vreeburg; Robert Bollema; Jorn R de Haan; Lidija Berke; Sandra Smit; Dick de Ridder; Theo A J van der Lee
Journal:  BMC Genomics       Date:  2021-04-14       Impact factor: 3.969

8.  Genome-Wide Analyses of the Temperature-Responsive Genetic Loci of the Pectinolytic Plant Pathogenic Pectobacterium atrosepticum.

Authors:  Natalia Kaczynska; Ewa Lojkowska; Magdalena Narajczyk; Robert Czajkowski
Journal:  Int J Mol Sci       Date:  2021-05-03       Impact factor: 5.923

9.  Analysis of the Taxonomy and Pathogenic Factors of Pectobacterium aroidearum L6 Using Whole-Genome Sequencing and Comparative Genomics.

Authors:  Peidong Xu; Huanwei Wang; Chunxiu Qin; Zengping Li; Chunhua Lin; Wenbo Liu; Weiguo Miao
Journal:  Front Microbiol       Date:  2021-07-02       Impact factor: 5.640

10.  Diversity of Pectobacteriaceae Species in Potato Growing Regions in Northern Morocco.

Authors:  Saïd Oulghazi; Mohieddine Moumni; Slimane Khayi; Kévin Robic; Sohaib Sarfraz; Céline Lopez-Roques; Céline Vandecasteele; Denis Faure
Journal:  Microorganisms       Date:  2020-06-13
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