| Literature DB >> 30723491 |
Haiming Liu1,2, Nan Wu2,3, Zhe Zhang2, XiaoDan Zhong1,4, Hao Zhang1, Hao Guo2, Yongzhan Nie2, Yuanning Liu1.
Abstract
Gastric cancer (GC) is a considerable global health burden. Accumulating evidence suggests that long non-coding RNAs (lncRNAs) are aberrantly expressed in many cancers and play important roles in GC. However, only a few lncRNAs have been functionally characterized. In this study, we identified that long intergenic non-protein coding RNA 941 (LINC00941) is a potential biomarker for diagnosis and prognosis from the cancer genome atlas (TCGA), and we found that the expression of LINC00941 is associated with tumor depth and distant metastasis in GC. Furthermore, functional enrichment analysis of LINC00941 co-expression network demonstrated that LINC00941 might be an essential regulator of tumor metastasis and cancer cell proliferation. To validate our findings, we utilized the loss-of-function analysis to reveal the biological function of LINC00941 in GC cells. Loss-of-function analysis revealed that silence of LINC00941 inhibits GC cells proliferation, migration, and invasion in vitro and modulates tumor growth in vivo. Our findings confirmed that LINC00941 plays an important oncogenic function in GC and may serve as a potential biomarker for diagnosis and prognosis of GC.Entities:
Keywords: LINC00941; TCGA; biomarker; gastric cancer; non-coding RNA
Year: 2019 PMID: 30723491 PMCID: PMC6349697 DOI: 10.3389/fgene.2019.00005
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1LINC00941 is potential diagnosis and prognosis biomarker for GC. (A) Venn diagram showed that only LINC00941 presented in the overlap of three data sets. (B) High expression of LINC00941 was associated with poor prognosis in GC. (C) LINC00941 were up-regulated in cancer samples, ∗p < 0.05. (D) LINC00941 was significantly up-regulated in M1 samples, ∗p < 0.05. (E) The ROC curve analysis for discriminative ability between cancer samples and normal samples. (F) The ROC curve analysis for discriminative ability between M1 samples and M0 samples.
Associations between the expression of LINC00941 and clinicopathological features in GC.
| Clinicopathological features | No. of patients | |||||
|---|---|---|---|---|---|---|
| M ± | HIGH | LOW | ||||
| Male | 229 | 13.2948 ± 2.1672 | 0.075 | 108 | 121 | 0.1524 |
| Female | 129 | 13.7071 ± 2.2679 | 71 | 58 | ||
| Histological type | ||||||
| Intestinal | 157 | 13.4669 ± 2.2533 | 0.324 | 83 | 74 | 0.1936 |
| Diffuse | 69 | 13.1354 ± 1.9947 | 30 | 39 | ||
| G1+G2 | 138 | 13.3593 ± 2.2462 | 0.722 | 67 | 71 | 0.6931 |
| G3 | 211 | 13.5146 ± 2.1727 | 107 | 104 | ||
| I/II | 89 | 13.0108 ± 2.1219 | 0.018∗ | 35 | 54 | 0.0197∗ |
| III/IV | 261 | 13.5589 ± 2.2355 | 140 | 121 | ||
| N0 | 104 | 13.089 ± 2.2773 | 0.0184∗ | 45 | 59 | 0.0994 |
| N1-3 | 236 | 13.6186 ± 2.1909 | 125 | 111 | ||
| M0 | 316 | 13.3147 ± 2.2169 | 0.003∗ | 152 | 164 | 0.0111∗ |
| M1 | 24 | 14.6567 ± 1.7331 | 18 | 6 | ||
| Stage I–II | 154 | 13.202 ± 2.2414 | 0.042∗ | 70 | 84 | 0.1129 |
| Stage III–IV | 181 | 13.6303 ± 2.2126 | 98 | 83 | ||
FIGURE 2Construction and functional enrichment analysis of LINC00941 co-expression network. (A) Scale-free topology index and mean connectivity were used to determine the soft threshold. (B) Clustering dendrogram of LINC00941 co-expression network. The genes are assigned to different modules that are distinguished by different colors. (C) The GO terms in LINC00941 co-expression model in GC. (D) The KEGG pathways in LINC00941 co-expression model in GC.
FIGURE 3Silence of LINC00941 inhibits GC cells proliferation in vitro. (A) LINC00941 was knocked down by siRNAs in MKN45 and AGS cells. (B) Silence of LINC00941 significantly inhibited the proliferation ability of MKN45 and AGS cells. The effect on cell proliferation was assessed over 4 days using the CCK8. (C) Colony formation ability of MKN45 and AGS cells was significantly decreased after silencing LINC00941. Two-tailed Student’s t-test was used to analyze the significant differences, ∗p < 0.05.
FIGURE 4Silence of LINC00941 inhibits GC cells migration and invasion in vitro. (A) Silence of LINC00941 inhibits the migration abilities of MKN45 and AGS cells. (B) Silence of LINC00941 inhibits the invasive ability of MKN45 and AGS. (C) The expression of E-cadherin, Fibronectin, and Snail1 in MKN45 and AGS cells was assessed by western blot and qRT-PCR. GAPDH was used as a loading control. The expression was normalized to GAPDH. Two-tailed Student’s t-test was used to analyze the significant differences, ∗p < 0.05.
FIGURE 5Silence of LINC00941 suppresses tumor growth in vivo. (A) LINC00941 was knocked down by shRNA in MKN45 cells. (B) The tumors in sh-LINC00941-infected nude mice significantly smaller than the negative control. (C) Tumor weights in nude mice with sh-LINC00941-infected were significantly lighter than the negative control. (D) Tumor volumes in nude mice with sh-LINC00941-infected significantly smaller than the negative control. Two-tailed Student’s t-test was used to analyze the significant differences, ∗p < 0.05.