Literature DB >> 3072199

DNA-dependent RNA polymerase of Escherichia coli induces bending or an increased flexibility of DNA by specific complex formation.

H Heumann1, M Ricchetti, W Werel.   

Abstract

Escherichia coli RNA polymerase is shown to induce bending or an increased flexibility of the promoter DNA. This is a specific effect of holoenzyme (core enzyme and sigma-factor). The centre of the flexibility is 3 bp upstream of the initiation point of RNA synthesis. This flexibility or bending is maintained during RNA synthesis by core enzyme.

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Year:  1988        PMID: 3072199      PMCID: PMC455170          DOI: 10.1002/j.1460-2075.1988.tb03336.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  26 in total

1.  Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription.

Authors:  A Heil; W Zillig
Journal:  FEBS Lett       Date:  1970-12       Impact factor: 4.124

2.  Intermediates in transcription initiation from the E. coli lac UV5 promoter.

Authors:  D C Straney; D M Crothers
Journal:  Cell       Date:  1985-12       Impact factor: 41.582

3.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

4.  A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase.

Authors:  N Gonzalez; J Wiggs; M J Chamberlin
Journal:  Arch Biochem Biophys       Date:  1977-08       Impact factor: 4.013

5.  A new method of large scale preparation of highly purified DNA-dependent RNA-polymerase from E. coli.

Authors:  W Zillig; K Zechel; H J Halbwachs
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1970-02

6.  Topography of interaction of Escherichia coli RNA polymerase subunits with lac UV5 promoter.

Authors:  A Chenchick; R Beabealashvilli; A Mirzabekov
Journal:  FEBS Lett       Date:  1981-06-01       Impact factor: 4.124

7.  Structure of the DNA-Eco RI endonuclease recognition complex at 3 A resolution.

Authors:  J A McClarin; C A Frederick; B C Wang; P Greene; H W Boyer; J Grable; J M Rosenberg
Journal:  Science       Date:  1986-12-19       Impact factor: 47.728

8.  Structure of the repressor-operator complex of bacteriophage 434.

Authors:  J E Anderson; M Ptashne; S C Harrison
Journal:  Nature       Date:  1987 Apr 30-May 6       Impact factor: 49.962

9.  Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base.

Authors:  J R Levin; B Krummel; M J Chamberlin
Journal:  J Mol Biol       Date:  1987-07-05       Impact factor: 5.469

10.  A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system.

Authors:  M M Garner; A Revzin
Journal:  Nucleic Acids Res       Date:  1981-07-10       Impact factor: 16.971

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  23 in total

1.  Influence of the sequence-dependent flexure of DNA on transcription in E. coli.

Authors:  C M Collis; P L Molloy; G W Both; H R Drew
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

Review 2.  RNA polymerase-promoter interactions: the comings and goings of RNA polymerase.

Authors:  P L deHaseth; M L Zupancic; M T Record
Journal:  J Bacteriol       Date:  1998-06       Impact factor: 3.490

Review 3.  Trajectory of DNA in the RNA polymerase II transcription preinitiation complex.

Authors:  T K Kim; T Lagrange; Y H Wang; J D Griffith; D Reinberg; R H Ebright
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

4.  Effect of DNA bending in various regions of a consensus-like Escherichia coli promoter on its strength in vivo and structure of the open complex in vitro.

Authors:  T Lozinski; K Adrych-Rozek; W T Markiewicz; K Wierzchowski
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

5.  The main early and late promoters of Bacillus subtilis phage phi 29 form unstable open complexes with sigma A-RNA polymerase that are stabilized by DNA supercoiling.

Authors:  F Rojo; B Nuez; M Mencía; M Salas
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

6.  DNA sequence determinants of LexA-induced DNA bending.

Authors:  R Lloubès; C Lazdunski; M Granger-Schnarr; M Schnarr
Journal:  Nucleic Acids Res       Date:  1993-05-25       Impact factor: 16.971

7.  Kinetic study in vitro of Escherichia coli promoter closure during transcription initiation.

Authors:  B Schmitt; C Reiss
Journal:  Biochem J       Date:  1995-02-15       Impact factor: 3.857

8.  Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: "jumping" of RNA polymerase and asymmetric expansion and contraction of the "transcription bubble".

Authors:  E Zaychikov; L Denissova; H Heumann
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

Review 9.  Promoters responsive to DNA bending: a common theme in prokaryotic gene expression.

Authors:  J Pérez-Martín; F Rojo; V de Lorenzo
Journal:  Microbiol Rev       Date:  1994-06

10.  Role of CRP in transcription activation at Escherichia coli lac promoter: CRP is dispensable after the formation of open complex.

Authors:  H Tagami; H Aiba
Journal:  Nucleic Acids Res       Date:  1995-02-25       Impact factor: 16.971

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