Literature DB >> 30721419

ELEquant: a developmental framework and validation of forensic and conservation real-time PCR assays.

Jillian Conte1,2, Margret J Potoczniak3, Courtney Mower4,5, Shanan S Tobe3,6.   

Abstract

A framework for the development and validation of a qPCR assay for species identification and DNA quantification for conservation and forensic purposes is presented. Elephants are commonly poached for their ivory tusks, which is the primary driving force behind their endangered status. In addition to poaching and trade, habitat loss due to logging and mining has also resulted in loss of elephants. Crimes against animals can be deterred and/or further prosecution sought through testing with forensic genetic techniques. The creation of novel genetic assays can greatly impact wildlife forensic science investigations in identifying the species. Molecular genetic techniques can help enforce conservation efforts; however, they must be properly developed and validated to be of evidentiary quality for court systems. African and Asian elephant buccal cells were used as model in this work. The assay provides a method to differentiate biological fluids of both genera of elephants simultaneously. It can be used for identification of elephant derived products and presents valuable quantification for optimized further testing, such as microsatellite detection.

Entities:  

Keywords:  African elephant; Asian elephant; Elephas maximus; Loxodonta africana; Standards; qPCR

Mesh:

Year:  2019        PMID: 30721419     DOI: 10.1007/s11033-019-04660-7

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  22 in total

1.  Validation of a 16-locus fluorescent multiplex system.

Authors:  Benjamin E Krenke; Allan Tereba; Stacey J Anderson; Eric Buel; Sherry Culhane; Carla J Finis; Christine S Tomsey; Jeffrey M Zachetti; Arni Masibay; Dawn R Rabbach; Elizabeth A Amiott; Cynthia J Sprecher
Journal:  J Forensic Sci       Date:  2002-07       Impact factor: 1.832

2.  AutoDimer: a screening tool for primer-dimer and hairpin structures.

Authors:  Peter M Vallone; John M Butler
Journal:  Biotechniques       Date:  2004-08       Impact factor: 1.993

3.  A widely applicable protocol for DNA isolation from fecal samples.

Authors:  Bao-Wei Zhang; Ming Li; Li-Chao Ma; Fu-Wen Wei
Journal:  Biochem Genet       Date:  2006-12       Impact factor: 1.890

Review 4.  DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics.

Authors:  Mehrdad Hajibabaei; Gregory A C Singer; Paul D N Hebert; Donal A Hickey
Journal:  Trends Genet       Date:  2007-02-20       Impact factor: 11.639

5.  Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils.

Authors:  C C Young; R L Burghoff; L G Keim; V Minak-Bernero; J R Lute; S M Hinton
Journal:  Appl Environ Microbiol       Date:  1993-06       Impact factor: 4.792

6.  Cytonuclear genomic dissociation in African elephant species.

Authors:  Alfred L Roca; Nicholas Georgiadis; Stephen J O'Brien
Journal:  Nat Genet       Date:  2004-12-12       Impact factor: 38.330

7.  DNA barcoding Australia's fish species.

Authors:  Robert D Ward; Tyler S Zemlak; Bronwyn H Innes; Peter R Last; Paul D N Hebert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

8.  Patterns of molecular genetic variation among African elephant populations.

Authors:  Kenine E Comstock; Nicholas Georgiadis; Jill Pecon-Slattery; Alfred L Roca; Elaine A Ostrander; Stephen J O'Brien; Samuel K Wasser
Journal:  Mol Ecol       Date:  2002-12       Impact factor: 6.185

9.  Polymorphic microsatellite DNA loci identified in the African elephant (Loxodonta africana).

Authors:  K E Comstock; S K Wasser; E A Ostrander
Journal:  Mol Ecol       Date:  2000-07       Impact factor: 6.185

10.  Identification of Birds through DNA Barcodes.

Authors:  Paul D N Hebert; Mark Y Stoeckle; Tyler S Zemlak; Charles M Francis
Journal:  PLoS Biol       Date:  2004-09-28       Impact factor: 8.029

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  2 in total

1.  Development and validation of simultaneous identification of 26 mammalian and poultry species by a multiplex assay.

Authors:  Chikahiro Mori; Shuichi Matsumura
Journal:  Int J Legal Med       Date:  2021-10-09       Impact factor: 2.686

2.  Discrimination of highly degraded, aged Asian and African elephant ivory using denaturing gradient gel electrophoresis (DGGE).

Authors:  Nitchakamon Suwanchatree; Phuvadol Thanakiatkrai; Adrian Linacre; Thitika Kitpipit
Journal:  Int J Legal Med       Date:  2020-09-25       Impact factor: 2.686

  2 in total

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