| Literature DB >> 30720743 |
Vera L M Silva1, Artur M S Silva2, Rosa M Claramunt3, Dionisia Sanz4, Lourdes Infantes5, Ángela Martínez-López6, Felipe Reviriego7, Ibon Alkorta8, José Elguero9.
Abstract
The reaction in phase-transfer catalyzed conditions of 3(5)-methyl-1H-pyrazole with chloroform affords four isomers 333, 335, 355 and 555 in proportions corresponding to the polynomial expansion (a + b)³, with a = 0.6 and b = 0.4, a and b being 3-methyl and 5-methyl proportions. The up (u) and down (d) conformation of the pyrazolyl rings with regard to the Csp³⁻H atom was established by X-ray crystallography and by ¹H-, 13C- and 15N-NMR in solution combined with gauge-including atomic orbitals (GIAO)/B3LYP/6-311++G(d,p) calculations. A comparison with other X-ray structures of tris-pyrazolylmethanes was carried out.Entities:
Keywords: GIAO calculations; NMR spectroscopy; X-ray crystallography; phase transfer catalysis; pyrazoles; pyrazolylmethanes; theoretical calculations
Mesh:
Substances:
Year: 2019 PMID: 30720743 PMCID: PMC6384863 DOI: 10.3390/molecules24030568
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The four tris [3(5)-methyl]pyrazol-1-ylmethanes and the (0.6 + 0.4)3 proportions.
Figure 2The 1H-NMR spectrum in CDCl3 of the Csp3-H proton of the crude mixture (integration in the vertical scale) [8].
Figure 3A view of the structure of (a) the 333 isomer (Cambridge Structural Database (CSD) [21] refcode: TUYZEU) and (b) the 335 isomer (bis(3-methylpyrazolyl, 5-methylpyrazolyl)methane). Displacement ellipsoids are drawn at 50% probability level. Hydrogen atoms are represented as spheres of 0.1Å radii.
1H-NMR data of trispyrazolylmethanes at 400.13 MHz. Solvent CDCl3. Chemical shifts (δ, ppm) in ppm; 1H-1H spin-spin coupling constants J (Hz).
| Isomer | 3-Methyl | 5-Methyl | CH |
|---|---|---|---|
|
| H4: 6.11 (d, 3 | ---- | 8.12 |
|
| H4: 6.11 (d, 3 | H3: 7.55 (d, 3 | 8.21 |
|
| H4: 6.12 (dq, 3 | H3: 7.37 (dq,3 | 8.26 (s) |
|
| ---- | H3: 7.51 (ddq, 3 | 8.31 (s) |
1H (400.13 MHz), 13C (100.62 MHz) and 15N (40.54 MHz) NMR data of trispyrazolylmethanes. Solvent C6D6. Chemical shifts (δ, ppm) in ppm; 1H-1H and 1H-13C spin-spin coupling constants J (Hz).
| Isomer | 3-Methyl | 5-Methyl | CH |
|---|---|---|---|
|
| N1: –173.3 | ---- | ---- |
| C3: 150.9 | ---- | 83.8 | |
| H4: 5.76 (d, 3 | ---- | 8.22 | |
|
| N1: –172.8 | N1: –171.4 | ---- |
| C3: 150.5 | C3: 141.2, 1 | 81.4 | |
| H4: 5.82 (d, 3 | H3: 7.36 (d, 3 | 8.40 (s) | |
|
| N1: –175.6 | N1: –171.3 | ---- |
| C3: 151.0 | C3: 140.7, 1 | 81.6 | |
| H4: 5.82 (3 | H3: 7.37 (3 | 8.46 (s) | |
|
| ---- | N1: –173.4 | ---- |
| ---- | C3: 140.1, 1 | 82.1 | |
| ---- | H3: 7.37 (3 | 8.43 (s) |
Best conformers according to the method. 1H in CDCl3; 13C and 15N in C6D6.
| Comp | Conformation | Erel | 1H | 13C | 15N | X-ray |
|---|---|---|---|---|---|---|
|
|
| 37.1 |
| |||
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| 11.2 |
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| 2.4 |
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| 37.4 | ||||
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| 15.1 |
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| 17.3 |
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| 12.6 |
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| 12.1 | |||||
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| 23.2 | ||||
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| 2.5 |
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| 4.1 |
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| 9.9 | |||||
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| 10.7 |
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| 19.3 | ||||
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| 5.9 |
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| ||
|
| 18.5 |
Figure 4Evolution of the 333/335 ratio with time. (a) Recorded after 1 h in CDCl3, about 95% of 335 isomer and 5% of 333 isomer; (b) recorded after one night in CDCl3, about 50/50 of 335 and 333 isomer.
Selected geometrical parameters for 333 and 335.
| 333 | 335 | |||||
|---|---|---|---|---|---|---|
| pz_A | pz_B | pz_C | pz_A | pz_B | pz_C | |
| N1-N2 | 1.359 | 1.362 | 1.355 | 1.359(5) | 1.364(5) | 1.346(6) |
| N2-C3 | 1.330 | 1.328 | 1.335 | 1.328(6) | 1.332(5) | 1.351(7) |
| C3-C4 | 1.401 | 1.402 | 1.395 | 1.375(7) | 1.383(6) | 1.338(8) |
| C4-C5 | 1.361 | 1.362 | 1.357 | 1.360(7) | 1.343(6) | 1.339(7) |
| N1-C5 | 1.349 | 1.351 | 1.347 | 1.326(5) | 1.350(5) | 1.402(6) |
| C1-N1 | 1.445 | 1.444 | 1.440 | 1.453(5) | 1.455(5) | 1.483(6) |
| C5-N1-N2 | 111.8 | 112.1 | 112.5 | 111.2(4) | 111.8(3) | 112.0(4) |
| N1-N2-C3 | 104.8 | 104.6 | 104.3 | 105.1(4) | 104.1(3) | 105.0(4) |
| N2-C3-C4 | 110.9 | 111.0 | 110.7 | 110.5(4) | 110.9(4) | 108.8(5) |
| C3-C4-C5 | 105.5 | 105.8 | 106.2 | 106.1(4) | 106.9(4) | 112.1(5) |
| C4-C5-N1 | 107.0 | 106.5 | 106.2 | 107.2(4) | 106.4(4) | 102.1(5) |
| C1-N1-N2 | 117.5 | 117.4 | 121.5 | 117.0(3) | 118.3(3) | 119.6(3) |
| N2/1-C3/5-C6 | 120.2 | 120.4 | 120.6 | 120.8(5) | 120.5(4) | 120.5(5) |
| C4-C3/5-C6 | 128.9 | 128.5 | 128.7 | 128.6(5) | 128.7(4) | 137.5(5) |
| H1-C1-N1-N2 | 24.5 | 28.0 | −170.9 | 39.0(6) | 17.6(7) | −168.1(3) |
| H1-C1-N1-C5 | −164.8 | −160.0 | 10.8 | −150.3(5) | −163.4(5) | 15.3(5) |
| C1-N1-N2-C3 | 173.4 | 173.6 | −178.4 | 172.6(4) | 179.9(4) | −177.7(4) |
Figure 5A view of the molecular structure of compound 335 showing the highest difference peaks (e Å−3). Dotted lines joining these peaks mimic the disorder model observed and refined for the other crystal collected at low temperature.
Figure 6Three views of the structure of compound 335.
Figure 7Molecular diagram of 17 trispyrazolylmethane derivatives recorded in the CSD version 5.39, updates to Feb 2018. ( cocrystallized with tmeda, benzene and n-hexane solvates).
Figure 8The most relevant calculated structures (the geometries of all the structures are to be found in the ESI).
Energies (kJ·mol–1). The minimum energy conformation in black; the crystallographic structure, TUYZEU, in italics.
| Compound | Conformation | Relative Energy, Conformations | Relative Energy, Isomers |
|---|---|---|---|
|
|
| 37.1 | |
|
| 11.2 | ||
|
|
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| |
|
| 2.4 | ||
| TUYZEU |
|
| |
|
|
| 37.4 | 39.1 |
|
| 15.1 | 16.8 | |
|
| 17.3 | 19.0 | |
|
| 12.6 | 14.2 | |
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| |
|
| 12.1 | 13.8 | |
|
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| 23.2 | 41.0 |
|
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| |
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| 2.5 | 20.4 | |
|
| 4.1 | 22.0 | |
|
| 9.9 | 27.8 | |
|
| 10.7 | 28.6 | |
|
|
| 19.3 | 43.1 |
|
|
|
| |
|
| 5.9 | 29.7 | |
|
| 18.5 | 42.3 |
Torsions (°). The minimum energy conformation in black; the crystallographic structure, TUYZEU, in italics.
| Compound | Conformation | 8-7-1-23 | 13-12-1-23 | 3-2-1-23 |
|---|---|---|---|---|
|
|
| 145.3 | 145.3 | 145.3 |
|
|
|
|
| |
|
| −32.9 | −28.1 | 174.4 | |
|
| −40.5 | −40.5 | −40.5 | |
| TUYZEU |
| −32.9 | −28.2 | 174.4 |
| X-ray |
| −27.97 | −24.48 | 170.87 |
|
|
| −143.4 | −149.9 | −136.1 |
|
| −173.0 | −85.7 | 12.3 | |
|
| 145.3 | −38.6 | −26.9 | |
|
| −170.1 | 4.7 | −151.7 | |
|
|
|
|
| |
|
| −52.1 | −41.1 | −29.0 | |
| X-ray |
| −39.0(6) | −17.4(7) | 168.2(3) |
|
|
| −136.2 | −147.6 | −139.6 |
|
|
|
|
| |
|
| 145.3 | −38.6 | −26.9 | |
|
| −170.1 | 4.7 | −151.7 | |
|
| −57.9 | 162.3 | −22.9 | |
|
| −43.3 | −43.1 | −34.4 | |
|
|
| 139.2 | 139.2 | 139.2 |
|
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| |
|
| −24.2 | −50.0 | 156.1 | |
|
| −40.2 | −40.2 | −40.2 |