| Literature DB >> 26594542 |
Margaret A Goodman1, M Scott Goodman2, Alexander Y Nazarenko2, Ealin N Patel2.
Abstract
The title mol-ecule, C13H16N6, crystallizes from hexane as a mol-ecular crystal with no strong inter-molecular inter-actions (the shortest C-H⋯N contact is longer than 3.38 Å). A relatively short intra-molecular contact (3.09 Å) has a C-H⋯N angle of 118° which is quite small to be still considered a hydrogen bond. The three pyrazole rings form a propeller-like motif, with one methylpyrazole unit almost perpendicular to the mean plane of the three rings [82.20 (6)°]. The other two methylpyrazole units, with nitrogen donor atoms oriented in opposite directions, are oriented at 67.26 (6) and 72.53 (6)° to the mean plane.Entities:
Keywords: 1,1′,1′′-methanetriyltris(3-methyl-1H-pyrazole); crystal structure; tripyrazolylmethane
Year: 2015 PMID: 26594542 PMCID: PMC4645007 DOI: 10.1107/S2056989015017247
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C13H16N6 | |
| Monoclinic, | Mo |
| Cell parameters from 9433 reflections | |
| θ = 2.9–25.7° | |
| µ = 0.08 mm−1 | |
| β = 111.630 (2)° | |
| Block, colourless | |
| 0.60 × 0.48 × 0.29 mm |
| Bruker Photon-100 CMOS diffractometer | 2171 reflections with |
| Radiation source: sealedtube | |
| φ and ω scans | θmax = 25.7°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 22036 measured reflections | |
| 2612 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2612 reflections | Δρmax = 0.28 e Å−3 |
| 225 parameters | Δρmin = −0.19 e Å−3 |
| Experimental. SADABS-2014/5 (Bruker,2014/5) was used for absorption correction. wR2(int) was 0.0499 before and 0.0468 after correction. The ratio of minimum to maximum transmission is 0.9453. The λ/2 correction factor is 0.00150. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. 1. Fixed Uiso At 1.2 times of: All C(H) groups, All C(H,H,H,H,H,H) groups 2. Others Sof(H5D)=Sof(H5E)=Sof(H5F)=1-FVAR(1) Sof(H5A)=Sof(H5B)=Sof(H5C)=FVAR(1) 3.a Disordered Me refined with riding coordinates and stretchable bonds: C5(H5A,H5B,H5C,H5D,H5E,H5F) |
| Occ. (<1) | |||||
| N1 | 0.75721 (10) | 0.58635 (9) | 0.89470 (13) | 0.0257 (3) | |
| C1 | 0.81554 (12) | 0.51681 (10) | 0.82664 (15) | 0.0231 (3) | |
| H1 | 0.8972 (14) | 0.5366 (11) | 0.8603 (18) | 0.028* | |
| N2 | 0.64449 (11) | 0.57102 (10) | 0.88717 (14) | 0.0322 (3) | |
| C2 | 0.80352 (15) | 0.67251 (12) | 0.96750 (19) | 0.0379 (4) | |
| H2 | 0.8860 (18) | 0.6925 (14) | 0.984 (2) | 0.051 (5)* | |
| N3 | 0.76487 (10) | 0.52045 (9) | 0.65612 (13) | 0.0247 (3) | |
| C3 | 0.71772 (17) | 0.71542 (14) | 1.0092 (2) | 0.0469 (4) | |
| H3 | 0.7246 (19) | 0.7797 (18) | 1.066 (3) | 0.074 (7)* | |
| N4 | 0.83993 (11) | 0.50592 (9) | 0.57737 (14) | 0.0288 (3) | |
| C4 | 0.62038 (14) | 0.65090 (12) | 0.95767 (18) | 0.0358 (4) | |
| N5 | 0.81296 (9) | 0.41679 (8) | 0.88404 (12) | 0.0224 (3) | |
| C5 | 0.50296 (17) | 0.66100 (16) | 0.9753 (2) | 0.0547 (5) | |
| H5A | 0.50076 (17) | 0.7279 (9) | 1.0330 (8) | 0.066* | 0.544 (19) |
| H5B | 0.4350 (9) | 0.66087 (16) | 0.8637 (14) | 0.066* | 0.544 (19) |
| H5C | 0.4909 (2) | 0.6013 (8) | 1.0416 (9) | 0.066* | 0.544 (19) |
| H5D | 0.4504 (7) | 0.5989 (8) | 0.9259 (7) | 0.066* | 0.456 (19) |
| H5E | 0.5161 (2) | 0.66585 (18) | 1.0952 (15) | 0.066* | 0.456 (19) |
| H5F | 0.4602 (6) | 0.7254 (8) | 0.9172 (8) | 0.066* | 0.456 (19) |
| N6 | 0.90717 (10) | 0.38708 (9) | 1.01297 (12) | 0.0249 (3) | |
| C6 | 0.64987 (13) | 0.52449 (12) | 0.55706 (17) | 0.0310 (3) | |
| H6 | 0.5895 (15) | 0.5348 (12) | 0.5961 (19) | 0.031 (4)* | |
| C7 | 0.64953 (14) | 0.51349 (12) | 0.40812 (17) | 0.0332 (4) | |
| H7 | 0.5830 (16) | 0.5140 (13) | 0.313 (2) | 0.043 (5)* | |
| C8 | 0.76915 (13) | 0.50248 (11) | 0.42596 (16) | 0.0299 (3) | |
| C9 | 0.82000 (19) | 0.48816 (18) | 0.3011 (2) | 0.0473 (5) | |
| H9A | 0.905 (2) | 0.4833 (17) | 0.347 (3) | 0.072 (7)* | |
| H9B | 0.784 (2) | 0.433 (2) | 0.236 (3) | 0.084 (8)* | |
| H9C | 0.805 (2) | 0.548 (2) | 0.234 (3) | 0.088 (8)* | |
| C10 | 0.72423 (13) | 0.34908 (11) | 0.84262 (18) | 0.0311 (3) | |
| H10 | 0.6507 (15) | 0.3624 (12) | 0.755 (2) | 0.036 (4)* | |
| C11 | 0.76199 (14) | 0.27160 (12) | 0.94568 (19) | 0.0332 (4) | |
| H11 | 0.7205 (15) | 0.2122 (13) | 0.945 (2) | 0.039 (5)* | |
| C12 | 0.87610 (13) | 0.29819 (11) | 1.04977 (16) | 0.0285 (3) | |
| C13 | 0.95886 (18) | 0.24190 (16) | 1.1873 (2) | 0.0454 (4) | |
| H13A | 1.032 (2) | 0.2793 (19) | 1.244 (3) | 0.086 (8)* | |
| H13B | 0.921 (2) | 0.2225 (19) | 1.253 (3) | 0.088 (8)* | |
| H13C | 0.982 (2) | 0.183 (2) | 1.150 (3) | 0.094 (9)* |
| N1 | 0.0252 (6) | 0.0268 (6) | 0.0242 (6) | −0.0002 (5) | 0.0081 (5) | −0.0029 (5) |
| C1 | 0.0219 (7) | 0.0251 (7) | 0.0210 (7) | −0.0020 (5) | 0.0063 (5) | −0.0013 (5) |
| N2 | 0.0272 (7) | 0.0379 (7) | 0.0315 (7) | 0.0033 (5) | 0.0108 (5) | −0.0050 (5) |
| C2 | 0.0404 (10) | 0.0334 (9) | 0.0411 (9) | −0.0069 (7) | 0.0163 (7) | −0.0108 (7) |
| N3 | 0.0224 (6) | 0.0305 (7) | 0.0209 (6) | −0.0011 (5) | 0.0077 (5) | −0.0003 (5) |
| C3 | 0.0528 (11) | 0.0350 (10) | 0.0560 (11) | 0.0016 (8) | 0.0237 (9) | −0.0134 (8) |
| N4 | 0.0281 (7) | 0.0350 (7) | 0.0261 (6) | 0.0001 (5) | 0.0134 (5) | 0.0006 (5) |
| C4 | 0.0351 (9) | 0.0406 (9) | 0.0316 (8) | 0.0104 (7) | 0.0122 (7) | 0.0000 (7) |
| N5 | 0.0199 (6) | 0.0241 (6) | 0.0221 (6) | −0.0007 (4) | 0.0064 (4) | −0.0015 (5) |
| C5 | 0.0450 (11) | 0.0647 (13) | 0.0602 (12) | 0.0151 (9) | 0.0260 (9) | −0.0059 (10) |
| N6 | 0.0231 (6) | 0.0310 (7) | 0.0207 (6) | 0.0004 (5) | 0.0081 (5) | 0.0023 (5) |
| C6 | 0.0236 (7) | 0.0424 (9) | 0.0252 (7) | −0.0006 (6) | 0.0070 (6) | −0.0003 (6) |
| C7 | 0.0317 (8) | 0.0409 (9) | 0.0224 (7) | −0.0006 (7) | 0.0048 (6) | 0.0004 (6) |
| C8 | 0.0347 (8) | 0.0309 (8) | 0.0245 (7) | −0.0015 (6) | 0.0115 (6) | 0.0007 (6) |
| C9 | 0.0467 (11) | 0.0697 (14) | 0.0302 (9) | −0.0003 (10) | 0.0195 (8) | −0.0020 (9) |
| C10 | 0.0236 (8) | 0.0287 (8) | 0.0374 (8) | −0.0033 (6) | 0.0069 (7) | −0.0032 (6) |
| C11 | 0.0314 (8) | 0.0262 (8) | 0.0455 (9) | −0.0045 (6) | 0.0182 (7) | 0.0001 (7) |
| C12 | 0.0302 (8) | 0.0309 (8) | 0.0295 (7) | 0.0018 (6) | 0.0169 (6) | 0.0040 (6) |
| C13 | 0.0448 (11) | 0.0479 (11) | 0.0436 (10) | 0.0026 (9) | 0.0163 (9) | 0.0205 (9) |
| N1—C1 | 1.4398 (18) | C5—H5D | 1.045 (13) |
| N1—N2 | 1.3546 (17) | C5—H5E | 1.045 (13) |
| N1—C2 | 1.347 (2) | C5—H5F | 1.045 (13) |
| C1—H1 | 0.956 (16) | N6—C12 | 1.3298 (19) |
| C1—N3 | 1.4436 (17) | C6—H6 | 0.932 (17) |
| C1—N5 | 1.4446 (17) | C6—C7 | 1.362 (2) |
| N2—C4 | 1.3353 (19) | C7—H7 | 0.939 (18) |
| C2—H2 | 0.99 (2) | C7—C8 | 1.402 (2) |
| C2—C3 | 1.357 (2) | C8—C9 | 1.490 (2) |
| N3—N4 | 1.3615 (16) | C9—H9A | 0.96 (2) |
| N3—C6 | 1.3506 (18) | C9—H9B | 0.95 (3) |
| C3—H3 | 0.99 (2) | C9—H9C | 0.98 (3) |
| C3—C4 | 1.395 (2) | C10—H10 | 0.965 (17) |
| N4—C8 | 1.3278 (18) | C10—C11 | 1.361 (2) |
| C4—C5 | 1.492 (2) | C11—H11 | 0.941 (18) |
| N5—N6 | 1.3591 (15) | C11—C12 | 1.401 (2) |
| N5—C10 | 1.3490 (18) | C12—C13 | 1.488 (2) |
| C5—H5A | 1.045 (13) | C13—H13A | 0.98 (3) |
| C5—H5B | 1.045 (13) | C13—H13B | 0.92 (3) |
| C5—H5C | 1.045 (13) | C13—H13C | 0.95 (3) |
| N2—N1—C1 | 121.52 (11) | H5B—C5—H5E | 141.1 |
| C2—N1—C1 | 125.94 (12) | H5B—C5—H5F | 56.3 |
| C2—N1—N2 | 112.52 (12) | H5C—C5—H5D | 56.3 |
| N1—C1—H1 | 107.0 (9) | H5C—C5—H5E | 56.3 |
| N1—C1—N3 | 111.06 (11) | H5C—C5—H5F | 141.1 |
| N1—C1—N5 | 111.55 (11) | H5D—C5—H5E | 109.5 |
| N3—C1—H1 | 108.3 (9) | H5D—C5—H5F | 109.5 |
| N3—C1—N5 | 111.27 (11) | H5E—C5—H5F | 109.5 |
| N5—C1—H1 | 107.4 (9) | C12—N6—N5 | 104.82 (11) |
| C4—N2—N1 | 104.33 (12) | N3—C6—H6 | 120.6 (10) |
| N1—C2—H2 | 121.4 (11) | N3—C6—C7 | 106.53 (13) |
| N1—C2—C3 | 106.24 (15) | C7—C6—H6 | 132.8 (10) |
| C3—C2—H2 | 132.4 (11) | C6—C7—H7 | 127.0 (11) |
| N4—N3—C1 | 117.37 (11) | C6—C7—C8 | 105.75 (13) |
| C6—N3—C1 | 130.02 (12) | C8—C7—H7 | 127.2 (11) |
| C6—N3—N4 | 112.10 (11) | N4—C8—C7 | 111.04 (13) |
| C2—C3—H3 | 126.0 (13) | N4—C8—C9 | 120.42 (14) |
| C2—C3—C4 | 106.23 (15) | C7—C8—C9 | 128.53 (14) |
| C4—C3—H3 | 127.8 (13) | C8—C9—H9A | 110.7 (14) |
| C8—N4—N3 | 104.56 (11) | C8—C9—H9B | 110.7 (15) |
| N2—C4—C3 | 110.68 (14) | C8—C9—H9C | 109.5 (15) |
| N2—C4—C5 | 120.61 (16) | H9A—C9—H9B | 113 (2) |
| C3—C4—C5 | 128.69 (16) | H9A—C9—H9C | 104.5 (19) |
| N6—N5—C1 | 117.49 (11) | H9B—C9—H9C | 108 (2) |
| C10—N5—C1 | 130.21 (12) | N5—C10—H10 | 120.1 (10) |
| C10—N5—N6 | 111.75 (11) | N5—C10—C11 | 106.96 (13) |
| C4—C5—H5A | 109.5 | C11—C10—H10 | 132.9 (10) |
| C4—C5—H5B | 109.5 | C10—C11—H11 | 127.0 (10) |
| C4—C5—H5C | 109.5 | C10—C11—C12 | 105.53 (13) |
| C4—C5—H5D | 109.5 | C12—C11—H11 | 127.5 (10) |
| C4—C5—H5E | 109.5 | N6—C12—C11 | 110.93 (13) |
| C4—C5—H5F | 109.5 | N6—C12—C13 | 120.15 (14) |
| H5A—C5—H5B | 109.5 | C11—C12—C13 | 128.92 (15) |
| H5A—C5—H5C | 109.5 | C12—C13—H13A | 112.2 (15) |
| H5A—C5—H5D | 141.1 | C12—C13—H13B | 110.5 (16) |
| H5A—C5—H5E | 56.3 | C12—C13—H13C | 108.8 (16) |
| H5A—C5—H5F | 56.3 | H13A—C13—H13B | 112 (2) |
| H5B—C5—H5C | 109.5 | H13A—C13—H13C | 107 (2) |
| H5B—C5—H5D | 56.3 | H13B—C13—H13C | 106 (2) |
| N1—C1—N3—N4 | 145.25 (12) | C2—C3—C4—C5 | 178.91 (17) |
| N1—C1—N3—C6 | −43.68 (19) | N3—C1—N5—N6 | 142.82 (11) |
| N1—C1—N5—N6 | −92.55 (13) | N3—C1—N5—C10 | −46.46 (19) |
| N1—C1—N5—C10 | 78.17 (17) | N3—N4—C8—C7 | −0.73 (16) |
| N1—N2—C4—C3 | −0.18 (17) | N3—N4—C8—C9 | 179.43 (15) |
| N1—N2—C4—C5 | −179.06 (15) | N3—C6—C7—C8 | 0.29 (18) |
| N1—C2—C3—C4 | −0.05 (19) | N4—N3—C6—C7 | −0.78 (17) |
| C1—N1—N2—C4 | −178.37 (12) | N5—C1—N3—N4 | −89.84 (14) |
| C1—N1—C2—C3 | 178.37 (14) | N5—C1—N3—C6 | 81.22 (18) |
| C1—N3—N4—C8 | 173.56 (12) | N5—N6—C12—C11 | −0.56 (15) |
| C1—N3—C6—C7 | −172.22 (14) | N5—N6—C12—C13 | 180.00 (14) |
| C1—N5—N6—C12 | 173.41 (11) | N5—C10—C11—C12 | 0.69 (16) |
| C1—N5—C10—C11 | −172.24 (13) | N6—N5—C10—C11 | −1.10 (16) |
| N2—N1—C1—N3 | 71.12 (16) | C6—N3—N4—C8 | 0.94 (16) |
| N2—N1—C1—N5 | −53.63 (16) | C6—C7—C8—N4 | 0.29 (18) |
| N2—N1—C2—C3 | −0.06 (18) | C6—C7—C8—C9 | −179.89 (18) |
| C2—N1—C1—N3 | −107.19 (16) | C10—N5—N6—C12 | 1.03 (15) |
| C2—N1—C1—N5 | 128.06 (15) | C10—C11—C12—N6 | −0.07 (17) |
| C2—N1—N2—C4 | 0.15 (16) | C10—C11—C12—C13 | 179.30 (17) |
| C2—C3—C4—N2 | 0.1 (2) |
| H··· | ||||
| C1—H1···N6i | 0.96 (2) | 2.44 (2) | 3.3796 (19) | 167 (1) |
| C6—H6···N2 | 0.932 (17) | 2.529 (16) | 3.0918 (19) | 119.2 (13) |