Literature DB >> 26594542

Crystal structure of tris-(3-methyl-1H-pyrazol-1-yl)methane.

Margaret A Goodman1, M Scott Goodman2, Alexander Y Nazarenko2, Ealin N Patel2.   

Abstract

The title mol-ecule, C13H16N6, crystallizes from hexane as a mol-ecular crystal with no strong inter-molecular inter-actions (the shortest C-H⋯N contact is longer than 3.38 Å). A relatively short intra-molecular contact (3.09 Å) has a C-H⋯N angle of 118° which is quite small to be still considered a hydrogen bond. The three pyrazole rings form a propeller-like motif, with one methylpyrazole unit almost perpendicular to the mean plane of the three rings [82.20 (6)°]. The other two methylpyrazole units, with nitrogen donor atoms oriented in opposite directions, are oriented at 67.26 (6) and 72.53 (6)° to the mean plane.

Entities:  

Keywords:  1,1′,1′′-methane­triyltris(3-methyl-1H-pyrazole); crystal structure; tripyrazolyl­methane

Year:  2015        PMID: 26594542      PMCID: PMC4645007          DOI: 10.1107/S2056989015017247

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For syntheses and reactions of tris­pyrazolyl­methanes and their complexes with transition metals, see: Goodman et al. (2012 ▸); Jameson & Castellano (1998 ▸); Reger et al. (2000 ▸).

Experimental

Crystal data

C13H16N6 M = 256.32 Monoclinic, a = 12.0881 (8) Å b = 13.4178 (10) Å c = 9.0985 (6) Å β = 111.630 (2)° V = 1371.82 (16) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.60 × 0.48 × 0.29 mm

Data collection

Bruker Photon-100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.706, T max = 0.747 22036 measured reflections 2612 independent reflections 2171 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.099 S = 1.05 2612 reflections 225 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015017247/zl2643sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017247/zl2643Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017247/zl2643Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017247/zl2643Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015017247/zl2643fig1.tif The mol­ecular structure of the title compound. Displacement elipsoids are drawn at the 50% probability level. Disorder of H atoms bonded to C5 are omitted for clarity. Click here for additional data file. c . DOI: 10.1107/S2056989015017247/zl2643fig2.tif Packing diagram of the title mol­ecule. View along the c axis. CCDC reference: 1424633 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H16N6F(000) = 544
Mr = 256.32Dx = 1.241 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 12.0881 (8) ÅCell parameters from 9433 reflections
b = 13.4178 (10) Åθ = 2.9–25.7°
c = 9.0985 (6) ŵ = 0.08 mm1
β = 111.630 (2)°T = 173 K
V = 1371.82 (16) Å3Block, colourless
Z = 40.60 × 0.48 × 0.29 mm
Bruker Photon-100 CMOS diffractometer2171 reflections with I > 2σ(I)
Radiation source: sealedtubeRint = 0.029
φ and ω scansθmax = 25.7°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2014)h = −14→14
Tmin = 0.706, Tmax = 0.747k = −16→16
22036 measured reflectionsl = −10→11
2612 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0457P)2 + 0.5131P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
2612 reflectionsΔρmax = 0.28 e Å3
225 parametersΔρmin = −0.19 e Å3
Experimental. SADABS-2014/5 (Bruker,2014/5) was used for absorption correction. wR2(int) was 0.0499 before and 0.0468 after correction. The ratio of minimum to maximum transmission is 0.9453. The λ/2 correction factor is 0.00150.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. 1. Fixed Uiso At 1.2 times of: All C(H) groups, All C(H,H,H,H,H,H) groups 2. Others Sof(H5D)=Sof(H5E)=Sof(H5F)=1-FVAR(1) Sof(H5A)=Sof(H5B)=Sof(H5C)=FVAR(1) 3.a Disordered Me refined with riding coordinates and stretchable bonds: C5(H5A,H5B,H5C,H5D,H5E,H5F)
xyzUiso*/UeqOcc. (<1)
N10.75721 (10)0.58635 (9)0.89470 (13)0.0257 (3)
C10.81554 (12)0.51681 (10)0.82664 (15)0.0231 (3)
H10.8972 (14)0.5366 (11)0.8603 (18)0.028*
N20.64449 (11)0.57102 (10)0.88717 (14)0.0322 (3)
C20.80352 (15)0.67251 (12)0.96750 (19)0.0379 (4)
H20.8860 (18)0.6925 (14)0.984 (2)0.051 (5)*
N30.76487 (10)0.52045 (9)0.65612 (13)0.0247 (3)
C30.71772 (17)0.71542 (14)1.0092 (2)0.0469 (4)
H30.7246 (19)0.7797 (18)1.066 (3)0.074 (7)*
N40.83993 (11)0.50592 (9)0.57737 (14)0.0288 (3)
C40.62038 (14)0.65090 (12)0.95767 (18)0.0358 (4)
N50.81296 (9)0.41679 (8)0.88404 (12)0.0224 (3)
C50.50296 (17)0.66100 (16)0.9753 (2)0.0547 (5)
H5A0.50076 (17)0.7279 (9)1.0330 (8)0.066*0.544 (19)
H5B0.4350 (9)0.66087 (16)0.8637 (14)0.066*0.544 (19)
H5C0.4909 (2)0.6013 (8)1.0416 (9)0.066*0.544 (19)
H5D0.4504 (7)0.5989 (8)0.9259 (7)0.066*0.456 (19)
H5E0.5161 (2)0.66585 (18)1.0952 (15)0.066*0.456 (19)
H5F0.4602 (6)0.7254 (8)0.9172 (8)0.066*0.456 (19)
N60.90717 (10)0.38708 (9)1.01297 (12)0.0249 (3)
C60.64987 (13)0.52449 (12)0.55706 (17)0.0310 (3)
H60.5895 (15)0.5348 (12)0.5961 (19)0.031 (4)*
C70.64953 (14)0.51349 (12)0.40812 (17)0.0332 (4)
H70.5830 (16)0.5140 (13)0.313 (2)0.043 (5)*
C80.76915 (13)0.50248 (11)0.42596 (16)0.0299 (3)
C90.82000 (19)0.48816 (18)0.3011 (2)0.0473 (5)
H9A0.905 (2)0.4833 (17)0.347 (3)0.072 (7)*
H9B0.784 (2)0.433 (2)0.236 (3)0.084 (8)*
H9C0.805 (2)0.548 (2)0.234 (3)0.088 (8)*
C100.72423 (13)0.34908 (11)0.84262 (18)0.0311 (3)
H100.6507 (15)0.3624 (12)0.755 (2)0.036 (4)*
C110.76199 (14)0.27160 (12)0.94568 (19)0.0332 (4)
H110.7205 (15)0.2122 (13)0.945 (2)0.039 (5)*
C120.87610 (13)0.29819 (11)1.04977 (16)0.0285 (3)
C130.95886 (18)0.24190 (16)1.1873 (2)0.0454 (4)
H13A1.032 (2)0.2793 (19)1.244 (3)0.086 (8)*
H13B0.921 (2)0.2225 (19)1.253 (3)0.088 (8)*
H13C0.982 (2)0.183 (2)1.150 (3)0.094 (9)*
U11U22U33U12U13U23
N10.0252 (6)0.0268 (6)0.0242 (6)−0.0002 (5)0.0081 (5)−0.0029 (5)
C10.0219 (7)0.0251 (7)0.0210 (7)−0.0020 (5)0.0063 (5)−0.0013 (5)
N20.0272 (7)0.0379 (7)0.0315 (7)0.0033 (5)0.0108 (5)−0.0050 (5)
C20.0404 (10)0.0334 (9)0.0411 (9)−0.0069 (7)0.0163 (7)−0.0108 (7)
N30.0224 (6)0.0305 (7)0.0209 (6)−0.0011 (5)0.0077 (5)−0.0003 (5)
C30.0528 (11)0.0350 (10)0.0560 (11)0.0016 (8)0.0237 (9)−0.0134 (8)
N40.0281 (7)0.0350 (7)0.0261 (6)0.0001 (5)0.0134 (5)0.0006 (5)
C40.0351 (9)0.0406 (9)0.0316 (8)0.0104 (7)0.0122 (7)0.0000 (7)
N50.0199 (6)0.0241 (6)0.0221 (6)−0.0007 (4)0.0064 (4)−0.0015 (5)
C50.0450 (11)0.0647 (13)0.0602 (12)0.0151 (9)0.0260 (9)−0.0059 (10)
N60.0231 (6)0.0310 (7)0.0207 (6)0.0004 (5)0.0081 (5)0.0023 (5)
C60.0236 (7)0.0424 (9)0.0252 (7)−0.0006 (6)0.0070 (6)−0.0003 (6)
C70.0317 (8)0.0409 (9)0.0224 (7)−0.0006 (7)0.0048 (6)0.0004 (6)
C80.0347 (8)0.0309 (8)0.0245 (7)−0.0015 (6)0.0115 (6)0.0007 (6)
C90.0467 (11)0.0697 (14)0.0302 (9)−0.0003 (10)0.0195 (8)−0.0020 (9)
C100.0236 (8)0.0287 (8)0.0374 (8)−0.0033 (6)0.0069 (7)−0.0032 (6)
C110.0314 (8)0.0262 (8)0.0455 (9)−0.0045 (6)0.0182 (7)0.0001 (7)
C120.0302 (8)0.0309 (8)0.0295 (7)0.0018 (6)0.0169 (6)0.0040 (6)
C130.0448 (11)0.0479 (11)0.0436 (10)0.0026 (9)0.0163 (9)0.0205 (9)
N1—C11.4398 (18)C5—H5D1.045 (13)
N1—N21.3546 (17)C5—H5E1.045 (13)
N1—C21.347 (2)C5—H5F1.045 (13)
C1—H10.956 (16)N6—C121.3298 (19)
C1—N31.4436 (17)C6—H60.932 (17)
C1—N51.4446 (17)C6—C71.362 (2)
N2—C41.3353 (19)C7—H70.939 (18)
C2—H20.99 (2)C7—C81.402 (2)
C2—C31.357 (2)C8—C91.490 (2)
N3—N41.3615 (16)C9—H9A0.96 (2)
N3—C61.3506 (18)C9—H9B0.95 (3)
C3—H30.99 (2)C9—H9C0.98 (3)
C3—C41.395 (2)C10—H100.965 (17)
N4—C81.3278 (18)C10—C111.361 (2)
C4—C51.492 (2)C11—H110.941 (18)
N5—N61.3591 (15)C11—C121.401 (2)
N5—C101.3490 (18)C12—C131.488 (2)
C5—H5A1.045 (13)C13—H13A0.98 (3)
C5—H5B1.045 (13)C13—H13B0.92 (3)
C5—H5C1.045 (13)C13—H13C0.95 (3)
N2—N1—C1121.52 (11)H5B—C5—H5E141.1
C2—N1—C1125.94 (12)H5B—C5—H5F56.3
C2—N1—N2112.52 (12)H5C—C5—H5D56.3
N1—C1—H1107.0 (9)H5C—C5—H5E56.3
N1—C1—N3111.06 (11)H5C—C5—H5F141.1
N1—C1—N5111.55 (11)H5D—C5—H5E109.5
N3—C1—H1108.3 (9)H5D—C5—H5F109.5
N3—C1—N5111.27 (11)H5E—C5—H5F109.5
N5—C1—H1107.4 (9)C12—N6—N5104.82 (11)
C4—N2—N1104.33 (12)N3—C6—H6120.6 (10)
N1—C2—H2121.4 (11)N3—C6—C7106.53 (13)
N1—C2—C3106.24 (15)C7—C6—H6132.8 (10)
C3—C2—H2132.4 (11)C6—C7—H7127.0 (11)
N4—N3—C1117.37 (11)C6—C7—C8105.75 (13)
C6—N3—C1130.02 (12)C8—C7—H7127.2 (11)
C6—N3—N4112.10 (11)N4—C8—C7111.04 (13)
C2—C3—H3126.0 (13)N4—C8—C9120.42 (14)
C2—C3—C4106.23 (15)C7—C8—C9128.53 (14)
C4—C3—H3127.8 (13)C8—C9—H9A110.7 (14)
C8—N4—N3104.56 (11)C8—C9—H9B110.7 (15)
N2—C4—C3110.68 (14)C8—C9—H9C109.5 (15)
N2—C4—C5120.61 (16)H9A—C9—H9B113 (2)
C3—C4—C5128.69 (16)H9A—C9—H9C104.5 (19)
N6—N5—C1117.49 (11)H9B—C9—H9C108 (2)
C10—N5—C1130.21 (12)N5—C10—H10120.1 (10)
C10—N5—N6111.75 (11)N5—C10—C11106.96 (13)
C4—C5—H5A109.5C11—C10—H10132.9 (10)
C4—C5—H5B109.5C10—C11—H11127.0 (10)
C4—C5—H5C109.5C10—C11—C12105.53 (13)
C4—C5—H5D109.5C12—C11—H11127.5 (10)
C4—C5—H5E109.5N6—C12—C11110.93 (13)
C4—C5—H5F109.5N6—C12—C13120.15 (14)
H5A—C5—H5B109.5C11—C12—C13128.92 (15)
H5A—C5—H5C109.5C12—C13—H13A112.2 (15)
H5A—C5—H5D141.1C12—C13—H13B110.5 (16)
H5A—C5—H5E56.3C12—C13—H13C108.8 (16)
H5A—C5—H5F56.3H13A—C13—H13B112 (2)
H5B—C5—H5C109.5H13A—C13—H13C107 (2)
H5B—C5—H5D56.3H13B—C13—H13C106 (2)
N1—C1—N3—N4145.25 (12)C2—C3—C4—C5178.91 (17)
N1—C1—N3—C6−43.68 (19)N3—C1—N5—N6142.82 (11)
N1—C1—N5—N6−92.55 (13)N3—C1—N5—C10−46.46 (19)
N1—C1—N5—C1078.17 (17)N3—N4—C8—C7−0.73 (16)
N1—N2—C4—C3−0.18 (17)N3—N4—C8—C9179.43 (15)
N1—N2—C4—C5−179.06 (15)N3—C6—C7—C80.29 (18)
N1—C2—C3—C4−0.05 (19)N4—N3—C6—C7−0.78 (17)
C1—N1—N2—C4−178.37 (12)N5—C1—N3—N4−89.84 (14)
C1—N1—C2—C3178.37 (14)N5—C1—N3—C681.22 (18)
C1—N3—N4—C8173.56 (12)N5—N6—C12—C11−0.56 (15)
C1—N3—C6—C7−172.22 (14)N5—N6—C12—C13180.00 (14)
C1—N5—N6—C12173.41 (11)N5—C10—C11—C120.69 (16)
C1—N5—C10—C11−172.24 (13)N6—N5—C10—C11−1.10 (16)
N2—N1—C1—N371.12 (16)C6—N3—N4—C80.94 (16)
N2—N1—C1—N5−53.63 (16)C6—C7—C8—N40.29 (18)
N2—N1—C2—C3−0.06 (18)C6—C7—C8—C9−179.89 (18)
C2—N1—C1—N3−107.19 (16)C10—N5—N6—C121.03 (15)
C2—N1—C1—N5128.06 (15)C10—C11—C12—N6−0.07 (17)
C2—N1—N2—C40.15 (16)C10—C11—C12—C13179.30 (17)
C2—C3—C4—N20.1 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1···N6i0.96 (2)2.44 (2)3.3796 (19)167 (1)
C6—H6···N20.932 (17)2.529 (16)3.0918 (19)119.2 (13)
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