Literature DB >> 30709880

Principles of Stress Granules Revealed by Imaging Approaches.

Briana Van Treeck1, Roy Parker1,2.   

Abstract

Eukaryotic cells contain a large number of RNA-protein assemblies, generically referred to as ribonucleoprotein (RNP) granules. Such RNP granules include stress granules and P-bodies in the cytosol and the nucleolus, Cajal bodies, and paraspeckles in the nucleus. A variety of imaging approaches have been used to reveal different components, structural features, and dynamics of RNP granules. In this review, we discuss imaging approaches that have been used to study stress granules and the insights gained from these experiments. A general theme is that these approaches can be transferred to other RNP granules to examine similar aspects of their composition, ultrastructure, dynamics and control.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 30709880      PMCID: PMC6360856          DOI: 10.1101/cshperspect.a033068

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  83 in total

1.  Dynamic association-dissociation and harboring of endogenous mRNAs in stress granules.

Authors:  Junwei Zhang; Kohki Okabe; Tokio Tani; Takashi Funatsu
Journal:  J Cell Sci       Date:  2011-12-01       Impact factor: 5.285

2.  Recruitment of the RNA helicase RHAU to stress granules via a unique RNA-binding domain.

Authors:  Katerina Chalupníková; Simon Lattmann; Nives Selak; Fumiko Iwamoto; Yukio Fujiki; Yoshikuni Nagamine
Journal:  J Biol Chem       Date:  2008-10-14       Impact factor: 5.157

Review 3.  Dynamic regulation of nucleolar architecture.

Authors:  Attila Németh; Ingrid Grummt
Journal:  Curr Opin Cell Biol       Date:  2018-03-09       Impact factor: 8.382

4.  Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

Authors:  Hyun-Woo Rhee; Peng Zou; Namrata D Udeshi; Jeffrey D Martell; Vamsi K Mootha; Steven A Carr; Alice Y Ting
Journal:  Science       Date:  2013-01-31       Impact factor: 47.728

5.  The Stress Granule Transcriptome Reveals Principles of mRNA Accumulation in Stress Granules.

Authors:  Anthony Khong; Tyler Matheny; Saumya Jain; Sarah F Mitchell; Joshua R Wheeler; Roy Parker
Journal:  Mol Cell       Date:  2017-11-09       Impact factor: 17.970

6.  Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies.

Authors:  Scott A Barbee; Patricia S Estes; Anne-Marie Cziko; Jens Hillebrand; Rene A Luedeman; Jeff M Coller; Nick Johnson; Iris C Howlett; Cuiyun Geng; Ryu Ueda; Andrea H Brand; Sarah F Newbury; James E Wilhelm; Richard B Levine; Akira Nakamura; Roy Parker; Mani Ramaswami
Journal:  Neuron       Date:  2006-12-21       Impact factor: 17.173

7.  RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules.

Authors:  N L Kedersha; M Gupta; W Li; I Miller; P Anderson
Journal:  J Cell Biol       Date:  1999-12-27       Impact factor: 10.539

8.  G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

Authors:  Nancy Kedersha; Marc D Panas; Christopher A Achorn; Shawn Lyons; Sarah Tisdale; Tyler Hickman; Marshall Thomas; Judy Lieberman; Gerald M McInerney; Pavel Ivanov; Paul Anderson
Journal:  J Cell Biol       Date:  2016-03-28       Impact factor: 10.539

9.  RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome.

Authors:  Briana Van Treeck; David S W Protter; Tyler Matheny; Anthony Khong; Christopher D Link; Roy Parker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

10.  Regulation of RNA granule dynamics by phosphorylation of serine-rich, intrinsically disordered proteins in C. elegans.

Authors:  Jennifer T Wang; Jarrett Smith; Bi-Chang Chen; Helen Schmidt; Dominique Rasoloson; Alexandre Paix; Bramwell G Lambrus; Deepika Calidas; Eric Betzig; Geraldine Seydoux
Journal:  Elife       Date:  2014-12-23       Impact factor: 8.140

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  10 in total

Review 1.  Illuminating Genomic Dark Matter with RNA Imaging.

Authors:  Arjun Raj; John L Rinn
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

Review 2.  Lighting up single-mRNA translation dynamics in living cells.

Authors:  Charlotte A Cialek; Amanda L Koch; Gabriel Galindo; Timothy J Stasevich
Journal:  Curr Opin Genet Dev       Date:  2020-05-11       Impact factor: 5.578

3.  Inhibition of Axon Regeneration by Liquid-like TIAR-2 Granules.

Authors:  Matthew G Andrusiak; Panid Sharifnia; Xiaohui Lyu; Zhiping Wang; Andrea M Dickey; Zilu Wu; Andrew D Chisholm; Yishi Jin
Journal:  Neuron       Date:  2019-08-01       Impact factor: 17.173

Review 4.  Control of Translation at the Initiation Phase During Glucose Starvation in Yeast.

Authors:  Yoshika Janapala; Thomas Preiss; Nikolay E Shirokikh
Journal:  Int J Mol Sci       Date:  2019-08-19       Impact factor: 5.923

5.  Treatment of cancer cells with Lapatinib negatively regulates general translation and induces stress granules formation.

Authors:  Pauline Adjibade; Bryan Simoneau; Nassim Ledoux; William-Naud Gauthier; Melisse Nkurunziza; Edouard W Khandjian; Rachid Mazroui
Journal:  PLoS One       Date:  2020-05-04       Impact factor: 3.240

Review 6.  Liquid-Liquid Phase Separation in Crowded Environments.

Authors:  Alain A M André; Evan Spruijt
Journal:  Int J Mol Sci       Date:  2020-08-17       Impact factor: 5.923

Review 7.  Transcription Regulators and Membraneless Organelles Challenges to Investigate Them.

Authors:  Katarzyna Sołtys; Andrzej Ożyhar
Journal:  Int J Mol Sci       Date:  2021-11-25       Impact factor: 5.923

Review 8.  Modulating biomolecular condensates: a novel approach to drug discovery.

Authors:  Diana M Mitrea; Matthäus Mittasch; Beatriz Ferreira Gomes; Isaac A Klein; Mark A Murcko
Journal:  Nat Rev Drug Discov       Date:  2022-08-16       Impact factor: 112.288

9.  Stress Granule-Mediated Oxidized RNA Decay in P-Body: Hypothetical Role of ADAR1, Tudor-SN, and STAU1.

Authors:  Ravi Kumar Alluri; Zhongwei Li; Keith R McCrae
Journal:  Front Mol Biosci       Date:  2021-06-04

10.  Typical 2-Cys Peroxiredoxins as a Defense Mechanism against Metal-Induced Oxidative Stress in the Solitary Ascidian Ciona robusta.

Authors:  Laura Drago; Diana Ferro; Rigers Bakiu; Loriano Ballarin; Gianfranco Santovito
Journal:  Antioxidants (Basel)       Date:  2021-12-30
  10 in total

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