Literature DB >> 30690720

A two-stage experimental design for dilution assays.

Jake M Ferguson1,2, Tanya A Miura1,3, Craig R Miller1.   

Abstract

Dilution assays to determine solute concentration have found wide use in biomedical research. Many dilution assays return imprecise concentration estimates because they are only done to orders of magnitude. Previous statistical work has focused on how to design efficient experiments that can return more precise estimates, however this work has not considered the practical difficulties of implementing these designs in the laboratory. We developed a two-stage experiment with a first stage that obtains an order of magnitude estimate and a second stage that concentrates effort on the most informative dilution to increase estimator precision. We show using simulations and an empirical example that the best two-stage experimental designs yield estimates that are remarkably more accurate than standard methods with equivalent effort. This work demonstrates how to utilize previous advances in experimental design in a manner consistent with current laboratory practice. We expect that multi-stage designs will prove to be useful for obtaining precise estimates with minimal experimental effort.
© 2019 International Biometric Society.

Entities:  

Keywords:  efficient experimental design; fisher information; generalized linear model; parameter estimation; single-hit poisson model

Mesh:

Year:  2019        PMID: 30690720      PMCID: PMC7199778          DOI: 10.1111/biom.13032

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  19 in total

1.  Immune responses and antibody decay after immunization of adolescents and adults with an acellular pertussis vaccine: the APERT Study.

Authors:  Thuan Le; James D Cherry; Swei-Ju Chang; Maria Deloria Knoll; Martin L Lee; Steve Barenkamp; David Bernstein; Robert Edelman; Kathryn M Edwards; David Greenberg; Wendy Keitel; John Treanor; Joel I Ward
Journal:  J Infect Dis       Date:  2004-07-07       Impact factor: 5.226

2.  The estimation of bacterial densities from dilution series.

Authors:  D J Finney
Journal:  J Hyg (Lond)       Date:  1951-03

3.  On the Statistical Interpretation of some Bacteriological Methods employed in Water Analysis.

Authors:  M Greenwood; G U Yule
Journal:  J Hyg (Lond)       Date:  1917-07

4.  Alternative criteria for optimal designs of limiting dilution assays.

Authors:  J N Matthews
Journal:  Stat Med       Date:  1998-12-15       Impact factor: 2.373

5.  Attenuation of Influenza A Virus Disease Severity by Viral Coinfection in a Mouse Model.

Authors:  Andres J Gonzalez; Emmanuel C Ijezie; Onesmo B Balemba; Tanya A Miura
Journal:  J Virol       Date:  2018-11-12       Impact factor: 5.103

6.  Infectivity assays of human rhinovirus-A and -B serotypes.

Authors:  Wai-Ming Lee; Yin Chen; Wensheng Wang; Anne Mosser
Journal:  Methods Mol Biol       Date:  2015

7.  Limiting dilution assays. Experimental design and statistical analysis.

Authors:  L W Strijbosch; W A Buurman; R J Does; P H Zinken; G Groenewegen
Journal:  J Immunol Methods       Date:  1987-02-26       Impact factor: 2.303

8.  Computer aided design and evaluation of limiting and serial dilution experiments.

Authors:  L W Strijbosch; R J Does; W A Buurman
Journal:  Int J Biomed Comput       Date:  1988-12

Review 9.  The evaluation of limiting dilution assays.

Authors: 
Journal:  J Immunol Methods       Date:  1982-03-12       Impact factor: 2.303

10.  Limiting dilution assays for the determination of immunocompetent cell frequencies. I. Data analysis.

Authors:  C Taswell
Journal:  J Immunol       Date:  1981-04       Impact factor: 5.422

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