Literature DB >> 30689885

The journey to transparency, reproducibility, and replicability.

Suzanne Bakken.   

Abstract

Mesh：

Year:  2019        PMID： 30689885      PMCID： PMC7647173          DOI： 10.1093/jamia/ocz007

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN： 1067-5027            Impact factor:   4.497


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  10 in total

1.  Social science. Promoting transparency in social science research.

Authors:  E Miguel; C Camerer; K Casey; J Cohen; K M Esterling; A Gerber; R Glennerster; D P Green; M Humphreys; G Imbens; D Laitin; T Madon; L Nelson; B A Nosek; M Petersen; R Sedlmayr; J P Simmons; U Simonsohn; M Van der Laan
Journal:  Science       Date:  2014-01-03       Impact factor: 47.728

2.  Spell checker for consumer language (CSpell).

Authors:  Chris J Lu; Alan R Aronson; Sonya E Shooshan; Dina Demner-Fushman
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

3.  Enrichment sampling for a multi-site patient survey using electronic health records and census data.

Authors:  Nathaniel D Mercaldo; Kyle B Brothers; David S Carrell; Ellen W Clayton; John J Connolly; Ingrid A Holm; Carol R Horowitz; Gail P Jarvik; Terrie E Kitchner; Rongling Li; Catherine A McCarty; Jennifer B McCormick; Valerie D McManus; Melanie F Myers; Joshua J Pankratz; Martha J Shrubsole; Maureen E Smith; Sarah C Stallings; Janet L Williams; Jonathan S Schildcrout
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

4.  Natural language processing and machine learning to identify alcohol misuse from the electronic health record in trauma patients: development and internal validation.

Authors:  Majid Afshar; Andrew Phillips; Niranjan Karnik; Jeanne Mueller; Daniel To; Richard Gonzalez; Ron Price; Richard Cooper; Cara Joyce; Dmitriy Dligach
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

5.  Preferred reporting items for systematic review and meta-analysis protocols (PRISMA-P) 2015: elaboration and explanation.

Authors:  Larissa Shamseer; David Moher; Mike Clarke; Davina Ghersi; Alessandro Liberati; Mark Petticrew; Paul Shekelle; Lesley A Stewart
Journal:  BMJ       Date:  2015-01-02

6.  Ten simple rules for reproducible computational research.

Authors:  Geir Kjetil Sandve; Anton Nekrutenko; James Taylor; Eivind Hovig
Journal:  PLoS Comput Biol       Date:  2013-10-24       Impact factor: 4.475

7.  A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research.

Authors:  Krzysztof J Gorgolewski; Russell A Poldrack
Journal:  PLoS Biol       Date:  2016-07-07       Impact factor: 8.029

8.  Enabling Open Science for Health Research: Collaborative Informatics Environment for Learning on Health Outcomes (CIELO).

Authors:  Philip Payne; Omkar Lele; Beth Johnson; Erin Holve
Journal:  J Med Internet Res       Date:  2017-07-31       Impact factor: 5.428

9.  An expandable approach for design and personalization of digital, just-in-time adaptive interventions.

Authors:  Suat Gonul; Tuncay Namli; Sasja Huisman; Gokce Banu Laleci Erturkmen; Ismail Hakki Toroslu; Ahmet Cosar
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

10.  Twenty-five years of national health IT: exploring strategy, structure, and systems in the English NHS.

Authors:  Colin Price; William Green; Olga Suhomlinova
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497
  10 in total
  8 in total

1.  New requirements for clinical trial transparency provide new opportunities for informatics research.

Authors:  Betsy L Humphreys
Journal:  J Am Med Inform Assoc       Date:  2019-06-01       Impact factor: 4.497

2.  Facilitating reproducible research through direct connection of data analysis with manuscript preparation: StatTag for connecting statistical software to Microsoft Word.

Authors:  Leah J Welty; Luke V Rasmussen; Abigail S Baldridge; Eric W Whitley
Journal:  JAMIA Open       Date:  2020-11-06

3.  Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites.

Authors:  William Digan; Aurélie Névéol; Antoine Neuraz; Maxime Wack; David Baudoin; Anita Burgun; Bastien Rance
Journal:  J Am Med Inform Assoc       Date:  2021-03-01       Impact factor: 4.497

4.  Replicable brain signatures of emotional bias and memory based on diffusion kurtosis imaging of white matter tracts.

Authors:  Thomas Welton; Ben E Indja; Jerome J Maller; Jonathon P Fanning; Michael P Vallely; Stuart M Grieve
Journal:  Hum Brain Mapp       Date:  2019-11-26       Impact factor: 5.038

5.  Data-sharing practices in publications funded by the Canadian Institutes of Health Research: a descriptive analysis.

Authors:  Kevin B Read; Heather Ganshorn; Sarah Rutley; David R Scott
Journal:  CMAJ Open       Date:  2021-11-09

6.  Web-Based Software Tools for Systematic Literature Review in Medicine: Systematic Search and Feature Analysis.

Authors:  Kathryn Cowie; Asad Rahmatullah; Nicole Hardy; Karl Holub; Kevin Kallmes
Journal:  JMIR Med Inform       Date:  2022-05-02

7.  Social media attention and citations of published outputs from re-use of clinical trial data: a matched comparison with articles published in the same journals.

Authors:  N Anthony; C Pellen; C Ohmann; D Moher; F Naudet
Journal:  BMC Med Res Methodol       Date:  2021-06-06       Impact factor: 4.615

8.  Towards the Use of Standardized Terms in Clinical Case Studies for Process Mining in Healthcare.

Authors:  Emmanuel Helm; Anna M Lin; David Baumgartner; Alvin C Lin; Josef Küng
Journal:  Int J Environ Res Public Health       Date:  2020-02-19       Impact factor: 3.390
  8 in total

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