Literature DB >> 30680376

Editing streptomycete genomes in the CRISPR/Cas9 age.

Fabrizio Alberti1, Christophe Corre.   

Abstract

Covering: up to December 2018 This article aims to highlight advantages, drawbacks and issues that users should consider when implementing the use of CRISPR/Cas9-tools for genome editing in streptomycetes, the most prolific source of antimicrobial natural products to date. Here, we examine four toolkits that have so far been made available for streptomycete in vivo-engineering and one for in vitro-editing, and review how they have been applied over the last three years. Our critical evaluation of these toolkits intends to support potential users in determining what they could achieve, what they should consider and what system they should select/optimise for their application.

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Year:  2019        PMID: 30680376     DOI: 10.1039/c8np00081f

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  21 in total

1.  CRISPR-Cas9, CRISPRi and CRISPR-BEST-mediated genetic manipulation in streptomycetes.

Authors:  Yaojun Tong; Christopher M Whitford; Kai Blin; Tue S Jørgensen; Tilmann Weber; Sang Yup Lee
Journal:  Nat Protoc       Date:  2020-07-10       Impact factor: 13.491

2.  Gene editing enables rapid engineering of complex antibiotic assembly lines.

Authors:  Wei Li Thong; Yingxin Zhang; Ying Zhuo; Katherine J Robins; Joanna K Fyans; Abigail J Herbert; Brian J C Law; Jason Micklefield
Journal:  Nat Commun       Date:  2021-11-25       Impact factor: 14.919

3.  Effect of pII key nitrogen regulatory gene on strain growth and butenyl-spinosyn biosynthesis in Saccharopolyspora pogona.

Authors:  Jinjuan Hu; Ziyuan Xia; Ling Shuai; Jianming Chen; Zirong Zhu; Li Cao; Jiao Xie; Zirui Dai; Yibo Hu; Weitao Huang; Shengbiao Hu; Yunjun Sun; Liqiu Xia
Journal:  Appl Microbiol Biotechnol       Date:  2022-04-04       Impact factor: 4.813

4.  Engineering Modular Polyketide Biosynthesis in Streptomyces Using CRISPR/Cas: A Practical Guide.

Authors:  Jean-Malo Massicard; Li Su; Christophe Jacob; Kira J Weissman
Journal:  Methods Mol Biol       Date:  2022

5.  CRISPR/Cas9-Based Methods for Inactivating Actinobacterial Biosynthetic Genes and Elucidating Function.

Authors:  Audam Chhun; Fabrizio Alberti
Journal:  Methods Mol Biol       Date:  2022

Review 6.  Heterologous production of cyanobacterial compounds.

Authors:  Dipesh Dhakal; Manyun Chen; Hendrik Luesch; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

7.  Fine-tuning the regulation of Cas9 expression levels for efficient CRISPR-Cas9 mediated recombination in Streptomyces.

Authors:  Suhui Ye; Behnam Enghiad; Huimin Zhao; Eriko Takano
Journal:  J Ind Microbiol Biotechnol       Date:  2020-05-04       Impact factor: 3.346

Review 8.  Dissolution of the Disparate: Co-ordinate Regulation in Antibiotic Biosynthesis.

Authors:  Thomas C McLean; Barrie Wilkinson; Matthew I Hutchings; Rebecca Devine
Journal:  Antibiotics (Basel)       Date:  2019-06-18

9.  Design of a generic CRISPR-Cas9 approach using the same sgRNA to perform gene editing at distinct loci.

Authors:  Soumaya Najah; Corinne Saulnier; Jean-Luc Pernodet; Stéphanie Bury-Moné
Journal:  BMC Biotechnol       Date:  2019-03-20       Impact factor: 2.563

10.  Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST.

Authors:  Yaojun Tong; Christopher M Whitford; Helene L Robertsen; Kai Blin; Tue S Jørgensen; Andreas K Klitgaard; Tetiana Gren; Xinglin Jiang; Tilmann Weber; Sang Yup Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

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