Literature DB >> 30674667

Litters of self-replicating origami cross-tiles.

Rebecca Zhuo1,2, Feng Zhou3,2, Xiaojin He1,2, Ruojie Sha2, Nadrian C Seeman4, Paul M Chaikin3.   

Abstract

Self-replication and exponential growth are ubiquitous in nature but until recently there were few examples of artificial self-replication. Often replication is a templated process where a parent produces a single offspring, doubling the population in each generation. Many species however produce more than one offspring at a time, enabling faster population growth and higher probability of species perpetuation. We have made a system of cross-shaped origami tiles that yields a number of offspring, four to eight or more, depending on the concentration of monomer units to be assembled. The parent dimer template serves as a seed to crystallize a one-dimensional crystal, a ladder. The ladder rungs are then UV-cross-linked and the offspring are then released by heating, to yield a litter of autonomous daughters. In the complement study, we also optimize the growth conditions to speed up the process and yield a 103 increase in the growth rate for the single-offspring replication system. Self-replication and exponential growth of autonomous motifs is useful for fundamental studies of selection and evolution as well as for materials design, fabrication, and directed evolution. Methods that increase the growth rate, the primary evolutionary drive, not only speed up experiments but provide additional mechanisms for evolving materials toward desired functionalities.

Keywords:  1D crystal; cross-tile DNA origami; exponential growth; multiple offspring; self-replication

Mesh:

Substances:

Year:  2019        PMID: 30674667      PMCID: PMC6369782          DOI: 10.1073/pnas.1812793116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

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Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

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Journal:  Nature       Date:  1998-11-19       Impact factor: 49.962

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Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

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Journal:  Nature       Date:  1997-12-11       Impact factor: 49.962

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Authors:  Junghoon Kim; Junwye Lee; Shogo Hamada; Satoshi Murata; Sung Ha Park
Journal:  Nat Nanotechnol       Date:  2015-05-11       Impact factor: 39.213

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Authors:  Wenyan Liu; Hong Zhong; Risheng Wang; Nadrian C Seeman
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9.  Exponential growth and selection in self-replicating materials from DNA origami rafts.

Authors:  Xiaojin He; Ruojie Sha; Rebecca Zhuo; Yongli Mi; Paul M Chaikin; Nadrian C Seeman
Journal:  Nat Mater       Date:  2017-09-18       Impact factor: 43.841

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Authors:  Katarzyna Adamala; Jack W Szostak
Journal:  Science       Date:  2013-11-29       Impact factor: 47.728

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  3 in total

1.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

2.  Direct visualization of floppy two-dimensional DNA origami using cryogenic electron microscopy.

Authors:  Heng Ni; Xiao Fan; Feng Zhou; Galio Guo; Jae Young Lee; Nadrian C Seeman; Do-Nyun Kim; Nan Yao; Paul M Chaikin; Yimo Han
Journal:  iScience       Date:  2022-05-07

3.  Mutations in artificial self-replicating tiles: A step toward Darwinian evolution.

Authors:  Feng Zhou; Ruojie Sha; Heng Ni; Nadrian Seeman; Paul Chaikin
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-14       Impact factor: 11.205

  3 in total

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