Literature DB >> 30663929

Balanced between order and disorder: a new phase in transcription elongation control and beyond.

Huasong Lu1, Rongdiao Liu2, Qiang Zhou1.   

Abstract

We recently reported that the cyclin T1 histidine-rich domain creates a phase-separated environment to promote hyperphosphorylation of RNA polymerase II C-terminal domain and robust transcriptional elongation by P-TEFb. Here, we discuss this and several other recent discoveries to demonstrate that phase separation is important for controlling various aspects of transcription.

Entities:  

Keywords:  P-TEFb; Phase separation; RNA polymerase II CTD; transcription elongation; transcriptional control

Mesh:

Substances:

Year:  2019        PMID: 30663929      PMCID: PMC6602568          DOI: 10.1080/21541264.2019.1570812

Source DB:  PubMed          Journal:  Transcription        ISSN: 2154-1272


  33 in total

1.  Phase separation drives heterochromatin domain formation.

Authors:  Amy R Strom; Alexander V Emelyanov; Mustafa Mir; Dmitry V Fyodorov; Xavier Darzacq; Gary H Karpen
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

2.  Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo.

Authors:  S H Chao; D H Price
Journal:  J Biol Chem       Date:  2001-06-28       Impact factor: 5.157

Review 3.  The RNA polymerase II carboxy-terminal domain (CTD) code.

Authors:  Dirk Eick; Matthias Geyer
Journal:  Chem Rev       Date:  2013-08-16       Impact factor: 60.622

Review 4.  The code and beyond: transcription regulation by the RNA polymerase II carboxy-terminal domain.

Authors:  Kevin M Harlen; L Stirling Churchman
Journal:  Nat Rev Mol Cell Biol       Date:  2017-03-01       Impact factor: 94.444

Review 5.  The pol II CTD: new twists in the tail.

Authors:  Justyna Zaborowska; Sylvain Egloff; Shona Murphy
Journal:  Nat Struct Mol Biol       Date:  2016-09-06       Impact factor: 15.369

6.  Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.

Authors:  Kathleen A Burke; Abigail M Janke; Christy L Rhine; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

7.  Phase separation of signaling molecules promotes T cell receptor signal transduction.

Authors:  Xiaolei Su; Jonathon A Ditlev; Enfu Hui; Wenmin Xing; Sudeep Banjade; Julia Okrut; David S King; Jack Taunton; Michael K Rosen; Ronald D Vale
Journal:  Science       Date:  2016-04-07       Impact factor: 47.728

8.  Active RNA polymerases are localized within discrete transcription "factories' in human nuclei.

Authors:  F J Iborra; A Pombo; D A Jackson; P R Cook
Journal:  J Cell Sci       Date:  1996-06       Impact factor: 5.285

9.  Phase transitions in the assembly of multivalent signalling proteins.

Authors:  Pilong Li; Sudeep Banjade; Hui-Chun Cheng; Soyeon Kim; Baoyu Chen; Liang Guo; Marc Llaguno; Javoris V Hollingsworth; David S King; Salman F Banani; Paul S Russo; Qiu-Xing Jiang; B Tracy Nixon; Michael K Rosen
Journal:  Nature       Date:  2012-03-07       Impact factor: 49.962

Review 10.  Nuclear speckles: molecular organization, biological function and role in disease.

Authors:  Lukasz Galganski; Martyna O Urbanek; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

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  3 in total

1.  Phase separation of TAZ compartmentalizes the transcription machinery to promote gene expression.

Authors:  Yi Lu; Tiantian Wu; Orit Gutman; Huasong Lu; Qiang Zhou; Yoav I Henis; Kunxin Luo
Journal:  Nat Cell Biol       Date:  2020-03-23       Impact factor: 28.824

Review 2.  Phase Separation-Mediated Chromatin Organization and Dynamics: From Imaging-Based Quantitative Characterizations to Functional Implications.

Authors:  Woei Shyuan Ng; Hendrik Sielaff; Ziqing Winston Zhao
Journal:  Int J Mol Sci       Date:  2022-07-21       Impact factor: 6.208

3.  The oncogenic transcription factor FUS-CHOP can undergo nuclear liquid-liquid phase separation.

Authors:  Izzy Owen; Debra Yee; Hala Wyne; Theodora Myrto Perdikari; Victoria Johnson; Jeremy Smyth; Robert Kortum; Nicolas L Fawzi; Frank Shewmaker
Journal:  J Cell Sci       Date:  2021-09-03       Impact factor: 5.235

  3 in total

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