Literature DB >> 30657688

O-GlcNAc Site Mapping by Using a Combination of Chemoenzymatic Labeling, Copper-Free Click Chemistry, Reductive Cleavage, and Electron-Transfer Dissociation Mass Spectrometry.

Junfeng Ma1, Wei-Han Wang2, Zengxia Li3, Jeffrey Shabanowitz2, Donald F Hunt2,4, Gerald W Hart1.   

Abstract

As a dynamic post-translational modification, O-linked β- N-acetylglucosamine ( O-GlcNAc) modification (i.e., O-GlcNAcylation) of proteins regulates many biological processes involving cellular metabolism and signaling. However, O-GlcNAc site mapping, a prerequisite for site-specific functional characterization, has been a challenge since its discovery. Herein we present a novel method for O-GlcNAc enrichment and site mapping. In this method, the O-GlcNAc moiety on peptides was labeled with UDP-GalNAz followed by copper-free azide-alkyne cycloaddition with a multifunctional reagent bearing a terminal cyclooctyne, a disulfide bridge, and a biotin handle. The tagged peptides were then released from NeutrAvidin beads upon reductant treatment, alkylated with (3-acrylamidopropyl)trimethylammonium chloride, and subjected to electron-transfer dissociation mass spectrometry analysis. After validation by using standard synthetic peptide gCTD and model protein α-crystallin, such an approach was applied to the site mapping of overexpressed TGF-β-activated kinase 1/MAP3K7 binding protein 2 (TAB2), with four O-GlcNAc sites unambiguously identified. Our method provides a promising tool for the site-specific characterization of O-GlcNAcylation of important proteins.

Entities:  

Year:  2019        PMID: 30657688      PMCID: PMC6756848          DOI: 10.1021/acs.analchem.8b05688

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  42 in total

1.  Simultaneous detection and identification of O-GlcNAc-modified glycoproteins using liquid chromatography-tandem mass spectrometry.

Authors:  P A Haynes; R Aebersold
Journal:  Anal Chem       Date:  2000-11-01       Impact factor: 6.986

2.  TAB2, a novel adaptor protein, mediates activation of TAK1 MAPKKK by linking TAK1 to TRAF6 in the IL-1 signal transduction pathway.

Authors:  G Takaesu; S Kishida; A Hiyama; K Yamaguchi; H Shibuya; K Irie; J Ninomiya-Tsuji; K Matsumoto
Journal:  Mol Cell       Date:  2000-04       Impact factor: 17.970

3.  Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry.

Authors:  John E P Syka; Joshua J Coon; Melanie J Schroeder; Jeffrey Shabanowitz; Donald F Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

4.  In-gel digestion for mass spectrometric characterization of proteins and proteomes.

Authors:  Andrej Shevchenko; Henrik Tomas; Jan Havlis; Jesper V Olsen; Matthias Mann
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

5.  Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.

Authors:  Lance Wells; Keith Vosseller; Robert N Cole; Janet M Cronshaw; Michael J Matunis; Gerald W Hart
Journal:  Mol Cell Proteomics       Date:  2002-10       Impact factor: 5.911

6.  Quantitative analysis of both protein expression and serine / threonine post-translational modifications through stable isotope labeling with dithiothreitol.

Authors:  Keith Vosseller; Kirk C Hansen; Robert J Chalkley; Jonathan C Trinidad; Lance Wells; Gerald W Hart; Alma L Burlingame
Journal:  Proteomics       Date:  2005-02       Impact factor: 3.984

7.  Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics.

Authors:  Nelly Khidekel; Scott B Ficarro; Peter M Clark; Marian C Bryan; Danielle L Swaney; Jessica E Rexach; Yi E Sun; Joshua J Coon; Eric C Peters; Linda C Hsieh-Wilson
Journal:  Nat Chem Biol       Date:  2007-05-13       Impact factor: 15.040

8.  A chemical approach for identifying O-GlcNAc-modified proteins in cells.

Authors:  David J Vocadlo; Howard C Hang; Eun-Ju Kim; John A Hanover; Carolyn R Bertozzi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-21       Impact factor: 11.205

9.  Vertebrate lens alpha-crystallins are modified by O-linked N-acetylglucosamine.

Authors:  E P Roquemore; A Dell; H R Morris; M Panico; A J Reason; L A Savoy; G J Wistow; J S Zigler; B J Earles; G W Hart
Journal:  J Biol Chem       Date:  1992-01-05       Impact factor: 5.157

10.  Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation.

Authors:  Zihao Wang; Akhilesh Pandey; Gerald W Hart
Journal:  Mol Cell Proteomics       Date:  2007-05-16       Impact factor: 5.911

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  8 in total

Review 1.  O-GlcNAcylation: The Underestimated Emerging Regulators of Skeletal Muscle Physiology.

Authors:  Yang Liu; Ya-Jie Hu; Wen-Xuan Fan; Xin Quan; Bin Xu; Shi-Ze Li
Journal:  Cells       Date:  2022-05-30       Impact factor: 7.666

2.  Precision Mapping of O-Linked N-Acetylglucosamine Sites in Proteins Using Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Edwin E Escobar; Dustin T King; Jesús E Serrano-Negrón; Matthew G Alteen; David J Vocadlo; Jennifer S Brodbelt
Journal:  J Am Chem Soc       Date:  2020-06-19       Impact factor: 15.419

Review 3.  Mass Spectrometry for O-GlcNAcylation.

Authors:  Ruoting Yin; Xin Wang; Cheng Li; Yuhan Gou; Xuecheng Ma; Yongzhao Liu; Jianfang Peng; Chao Wang; Ying Zhang
Journal:  Front Chem       Date:  2021-12-06       Impact factor: 5.221

4.  Penta-o-galloyl-beta-d-Glucose (PGG) inhibits inflammation in human rheumatoid arthritis synovial fibroblasts and rat adjuvant-induced arthritis model.

Authors:  Sadiq Umar; Anil K Singh; Mukesh Chourasia; Stephanie M Rasmussen; Jeffrey H Ruth; Salahuddin Ahmed
Journal:  Front Immunol       Date:  2022-08-10       Impact factor: 8.786

Review 5.  A Pragmatic Guide to Enrichment Strategies for Mass Spectrometry-Based Glycoproteomics.

Authors:  Nicholas M Riley; Carolyn R Bertozzi; Sharon J Pitteri
Journal:  Mol Cell Proteomics       Date:  2020-12-20       Impact factor: 5.911

Review 6.  Role of O-Linked N-Acetylglucosamine Protein Modification in Cellular (Patho)Physiology.

Authors:  John C Chatham; Jianhua Zhang; Adam R Wende
Journal:  Physiol Rev       Date:  2020-07-30       Impact factor: 37.312

Review 7.  Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites.

Authors:  Jason C Maynard; Robert J Chalkley
Journal:  Mol Cell Proteomics       Date:  2021-02-09       Impact factor: 5.911

Review 8.  Calculating Glycoprotein Similarities From Mass Spectrometric Data.

Authors:  William E Hackett; Joseph Zaia
Journal:  Mol Cell Proteomics       Date:  2021-01-06       Impact factor: 5.911

  8 in total

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