| Literature DB >> 30655311 |
Meimei Xie1, Bihuan Cheng1, Yueping Ding2, Changliang Wang3, Jianshi Chen4.
Abstract
The present study was performed to investigate the association between interleukin-17 (IL-17) and nuclear factor κB (NF-κB) gene polymorphisms and the risk and prognosis of acute respiratory distress syndrome (ARDS) in a Chinese population. A total of 210 Chinese patients with ARDS were selected as the study group, 210 individuals who were identified as at-risk patients but did not meet criteria for ARDS were recruited as the control group. Three single nucleotide polymorphisms (SNPs) of IL-17, including rs763780 (A>G), rs2275913 (G>A), rs8193036 (C>T) and NF-κB1 gene rs3774934 (G>A) loci were examined by Sanger sequencing technique in the peripheral blood of all subjects. Patients were followed for 30-day survival. The IL-17 rs763780 and NF-κB1 rs3774934 SNPs had no impact on ARDS risk and prognosis of ARDS (P>0.05). Compared with individuals carrying the wild-type GG genotype of rs2275913 at IL-17, the AA-homozygous and GA- heterozygous individuals were protected from the development of ARDS. Consistently, a decreased 30-day mortality risk was found among A-allele carriers of rs2275913 at IL-17 (p<0.05). For IL-17 rs8193036 SNP, the homozygote TT genotype and heterozygote CT genotypes were associated with increased ARDS susceptibility and 30-day mortality risk (P<0.05). Besides, decreased IL-17 levels were found in A-allele carriers of IL-17 rs2275913, whereas individuals carrying T-allele of IL-17 rs8193036 were found to have significantly increased levels of IL-17 (P<0.05). Our results suggested that two functional polymorphisms of IL-17, rs2275913 and rs8193036 were associated with ARDS risk and prognosis, indicating that the two genetic variants might act as possible markers for the prediction of ARDS risk and development.Entities:
Keywords: IL-17; NF-κB1; acute respiratory distress syndrome; single nucleotide polymorphism
Mesh:
Substances:
Year: 2019 PMID: 30655311 PMCID: PMC6367126 DOI: 10.1042/BSR20181987
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Amplification primers and PCR amplification product information
| Gene | SNP | Primer sequences | Annealing temperature (°C) |
|---|---|---|---|
| IL-17 | rs763780 | Forward: ACCCCTGTCATCCACCATGT | 60 |
| (7488 A/G) | Reverse: GTGGCATTTCTACAGCTTCTTCA | ||
| rs2275913 | Forward: CTATGACCTCATTGGGGGCG | 60 | |
| (-197 G/A) | Reverse: GGTCACTTACGTGGCGTGTC | ||
| rs8193036 | Forward: CCATCTCCATCACCTTTGTCCA | 60 | |
| (-737 C/T) | Reverse: TTCCAACCCTGCATGCTACC | ||
| NF-κB1 | rs3774934 | Forward:TTTCTGTACACTCCATTGAAACTGT | 60 |
| (4531 G/A) | Reverse: GCAGTGCTTGTAGCATTGTTTCT |
Figure 1Sequencing of IL-17 and NF-κB1 SNP loci
(A-C): IL-17 rs763780 (7488 A/G) AA, AG and GG genotypes; (D-F): IL-17 rs2275913 (-197 G/A) GG, GA and AA genotypes; (G-I): IL-17 rs8193036 (-737 C/T) CC, CT and TT genotypes; (J-L): NF-κB1 rs3774934 (4531 G/A) GG, GA and AA genotypes.
Comparisons of baseline characteristics between the case group and the control group
| Characteristics | Case group ( | Control group ( | |
|---|---|---|---|
| Age (year, mean ± SD) | 58.4 ± 8.9 | 57.4 ± 9.1 | 0.256 |
| Sex ( | 0.696 | ||
| Male | 107 (51.0%) | 103 (49.0%) | |
| Female | 103 (49.0%) | 107 (51.0%) | |
| BMI (kg/m2, mean ± SD) | 22.3 ± 1.7 | 22.5 ± 1.8 | 0.242 |
| Smoking history ( | 0.470 | ||
| Yes | 67 (31.9%) | 74 (35.2%) | |
| No | 143 (68.1%) | 136 (64.8%) | |
| Alcohol history ( | 0.545 | ||
| Yes | 75 (35.7%) | 81 (38.6%) | |
| No | 135 (64.3%) | 129 (61.4%) |
Abbreviation: BMI, body mass index.
Distribution of IL-17 rs763780, rs2275913, rs8193036 and NF-κB1 rs3774934 polymorphisms and ARDS risk
| SNP | Case group ( | Control group ( | OR (95%CI) | OR (95%CI)* | ||
|---|---|---|---|---|---|---|
| IL-17 rs763780 | ||||||
| Genotype | ||||||
| AA | 180 (85.7%) | 185 (88.1%) | Ref | |||
| AG | 18 (8.6%) | 20 (9.5%) | 0.819 | 0.925 (0.451–1.896) | 0.954 | 0.961 (0.626–1.329) |
| GG | 12 (5.7%) | 5 (2.4%) | 0.086 | 2.467 (0.787–8.206) | 0.142 | 1.431 (0.882–1.826) |
| AA+AG | 198 (94.3%) | 205 (97.6%) | Ref | |||
| GG | 12 (5.7%) | 5 (2.4%) | 0.083 | 2.485 (0.794–8.247) | 0.137 | 1.437 (0.886–1.830) |
| AA | 180 (85.7%) | 185 (88.1%) | Ref | |||
| AG+GG | 30 (14.3%) | 25 (11.9%) | 0.470 | 1.233 (0.673–2.263) | 0.563 | 1.106 (0.809–1.415) |
| Allele | ||||||
| A | 378 (90.0%) | 390 (92.9%) | Ref | |||
| G | 42 (10.0%) | 30 (7.1%) | 0.139 | 1.444 (0.862–2.425) | 0.175 | 1.185 (0.927–1.438) |
| IL-17 rs2275913 | ||||||
| Genotype | ||||||
| GG | 158 (75.2%) | 89 (42.4%) | Ref | |||
| GA | 35 (16.7%) | 45 (21.4%) | 0.001 | 0.438 (0.254–0.754) | 0.002 | 0.684 (0.509–0.887) |
| AA | 17 (8.1%) | 76 (36.2%) | <0.001 | 0.126 (0.067–0.234) | <0.001 | 0.286 (0.176–0.439) |
| GG+GA | 193 (91.9%) | 134 (63.8%) | Ref | |||
| AA | 17 (8.1%) | 76 (36.2%) | <0.001 | 0.155 (0.084–0.283) | <0.001 | 0.310 (0.190–0.477) |
| GG | 158 (75.2%) | 89 (42.4%) | Ref | |||
| GA+AA | 52 (24.8%) | 121 (57.6%) | <0.001 | 0.242 (0.156–0.375) | <0.001 | 0.470 (0.364–0.599) |
| Allele | ||||||
| G | 351 (83.6%) | 223 (53.1%) | Ref | |||
| A | 69 (16.4%) | 197 (46.9%) | <0.001 | 0.223 (0.159–0.311) | <0.001 | 0.424 (0.340–0.523) |
| IL-17 rs8193036 | ||||||
| Genotype | ||||||
| CC | 74 (35.2%) | 137 (65.2%) | Ref | |||
| CT | 109 (51.9%) | 53 (25.2%) | <0.001 | 3.807 (2.414–6.017) | <0.001 | 1.919 (1.547–2.363) |
| TT | 27 (12.9%) | 20 (9.5%) | 0.004 | 2.499 (1.254–5.001) | 0.007 | 1.638 (1.143–2.186) |
| CC+CT | 183 (87.%) | 190 (90.5%) | Ref | |||
| TT | 27 (12.9%) | 20 (9.5%) | 0.279 | 1.402 (0.729–2.703) | 0.353 | 1.171 (0.846–1.496) |
| CC | 74 (35.2%) | 137 (65.2%) | Ref | |||
| CT+TT | 136 (64.8%) | 73 (34.8%) | <0.001 | 3.449 (2.265–5.260) | <0.001 | 1.855 (1.504–2.289) |
| Allele | ||||||
| C | 257 (61.2%) | 327 (77.9%) | Ref | |||
| T | 163 (38.8%) | 93 (22.1%) | <0.001 | 2.230 (1.629–3.054) | <0.001 | 1.447 (1.262–1.643) |
| NF-κB1 rs3774934 | ||||||
| Genotype | ||||||
| GG | 118 (56.2%) | 104 (49.5%) | Ref | |||
| GA | 49 (23.3%) | 49 (23.3%) | 0.603 | 0.881 (0.533–1.458) | 0.690 | 0.941 (0.726–1.189) |
| AA | 43 (20.5%) | 57 (27.1%) | 0.092 | 0.665 (0.402–1.099) | 0.117 | 0.809 (0.609–1.048) |
| GG+GA | 167 (79.5%) | 153 (72.9%) | Ref | |||
| AA | 43 (20.5%) | 57 (27.1%) | 0.109 | 0.691 (0.429–1.114) | 0.136 | 0.824 (0.625–1.054) |
| GG | 118 (56.2%) | 104 (49.5%) | Ref | |||
| GA+AA | 92 (43.8%) | 106 (50.5%) | 0.171 | 0.765 (0.511–1.144) | 0.204 | 0.874 (0.713–1.069) |
| Allele | ||||||
| G | 285 | 257 | Ref | |||
| A | 135 | 163 | 0.043 | 0.747 (0.557–1.002) | 0.052 | 0.862 (0.737–1.001) |
Notes: “OR*” adjusted by age, sex, alcohol and smoking; CI, confidence interval.
Figure 2Kaplan–Meier plots of 30-day survival curves
Kaplan–Meier plots of 30-day survival curves according to (A) IL-17 rs763780, (B) IL-17 rs2275913, (C) IL-17 rs8193036 and (D) NF-κB1 rs3774934 genotypes.
Figure 3Plasma levels of IL-17
Plasma levels of IL-17 with the allelic distribution of IL-17 variants, including rs763780, rs2275913 and rs8193036 genotypes.
Figure 4Plasma levels of NF-κB1
Plasma levels of NF-κB1with the allelic distribution of NF-κB1 rs3774934 variants.