| Literature DB >> 30652005 |
Hiroyuki Kondo1, Kazuma Oku1, Satoshi Katagiri2, Takaaki Hayashi2, Tadashi Nakano2, Akiko Iwata3, Kazuki Kuniyoshi3, Shunji Kusaka3, Atsushi Hiyoshi4, Eiichi Uchio4, Mineo Kondo5, Noriko Oishi6, Shuhei Kameya6, Atsushi Mizota7, Nobuhisa Naoi8, Shinji Ueno9, Hiroko Terasaki9, Takeshi Morimoto10, Masayoshi Iwaki11, Kazutoshi Yoshitake12, Daisuke Iejima12, Kaoru Fujinami13, Kazushige Tsunoda13, Kei Shinoda14, Takeshi Iwata12.
Abstract
X-linked congenital retinoschisis (XLRS) is an inherited retinal disorder characterized by reduced central vision and schisis of the macula and peripheral retina. XLRS is caused by mutations in the RS1 gene. We have identified 37 different mutations in the RS1 gene, including 12 novel mutations, in 67 Japanese patients from 56 XLRS families. We present clinical features of these patients in relation to the associated mutations.Entities:
Year: 2019 PMID: 30652005 PMCID: PMC6325138 DOI: 10.1038/s41439-018-0034-6
Source DB: PubMed Journal: Hum Genome Var ISSN: 2054-345X
Mutations in the RS1 gene and clinical features in patients with congenital retinoschisis
| Family no | Patient ID | Kinship | Age | Famial/ sporadic | Mutation | Ocular features | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Exon/intron | Nucleotide change (NM_000330.3) | Amino acid change | Novel/ reported (ID) | Visual acuity | Refraction of spherical equivalent (D) | Retinoschisis | Electroretinogram | Comment | ||||||||
| Foveal | Peripheral | ERG a-amplitude (μV) | b/a ratio | Light intensity (cds/m2) | ||||||||||||
| 1 | KS0001 | Proband | 4mo | Sporadic | 1 | c.35T>C | p.Leu12Pro | Novel | 0.02/NA | −0.375/+0.375 | −/ + | +/+ | 46/38.3 | 0.61/0.66 | 30 | B) Vx |
| 2 | F111 | Proband | 2 | Sporadic | 1 | c.38T>C | p.Leu13Pro | rs104894935 | NA/NA | NA/NA | + / + | +/+ | NA/NA | NA/NA | R) VH | |
| 3 | J0968 | Proband | 36 | Sporadic | 1 | c.49G>T | p.Glu17* | Novel | 0.8/0.3 | + 0.625/−0.375 | + / + | −/− | 312.5/226 | 0.78/0.93 | 3 | |
| 4 | RS30-1 | Proband | 8 | Sporadic | 2–3 | exon2-3 del | Novel | 0.3/0.3 | + 4/ + 3.625 | + / + | + / + | 227/167 | 0.91/0.95 | 30 | L) Vx | |
| 5 | J0913 | Proband | 6 | Sporadic | IVS2 | c.78+2T>C | USD | Novel | 0.5/0.7 | + 1.125/ + 0.75 | + / + | + / + | 267.5/NA | 0.56/NA | 200 | |
| 6 | RS13-1 | Proband | 4 | Familial | 3 | exon3 del | Undetermined | 0.4/0.2 | + 5.5/ + 2 | +/ + | + / + | 490/416 | 1.11/0.97 | b | L) VH, Vx, B) retinal fold | |
| 6 | RS13-2 | Sibling | 11 | Familial | 3 | exon3 del | Undetermined | 1.2/1.2 | + 0.75/ + 0.75 | +/ + | −/− | NA/NA | NA/NA | |||
| 7 | RS14-1 | Proband | 3 | Sporadic | 3 | c.98G>A | p.Trp33* | CM141023a | 0.6/0.06 | + 5.25/ + 6.5 | + / + | + /+ | 345/274 | 0.96/1.2 | b | |
| 8 | RS01-1 | Proband | 16 | Familial | 3 | c.175T>G | p.Cys59Gly | Novel | 0.5/0.02 | 0/−7.5 | + / + | + /+ | 467/360 | 0.55/0.7 | 3 | L) VH |
| 8 | RS01-2 | Sibling | 23 | Familial | 3 | c.175T>G | p.Cys59Gly | Novel | 0.5/0.5 | + 0.5/ + 0.5 | −/− | −/− | 314/331 | 0.3/0.25 | 3 | |
| 8 | RS01-3 | Sibling | 20 | Familial | 3 | c.175T>G | p.Cys59Gly | Novel | 0.4/0.4 | −0.25/0 | + / + | + /+ | 375/374 | 0.58/0.47 | 3 | |
| 9 | RS11-1 | Proband | 12 | Familial | 3 | c.175T>G | p.Cys59Gly | Novel | 0.05/0.8 | + 2/−0.25 | + / + | + /+ | 383/403 | 0.74/0.83 | 3 | R) Retinal hole |
| 9 | RS11-2 | Sibling | 7 | Familial | 3 | c.175T>G | p.Cys59Gly | Novel | 0.4/0.3 | + 0.5/−0.25 | + / + | −/ + | 457/401 | 0.9/0.76 | 3 | |
| 10 | J0381 | Proband | 17 | Sporadic | 3 | c.185_186insT | p.Glu62Aspfs*24 | Novel | 0.3/0.3 | −3/−2.5 | +/ + | −/− | 129/146 | 1.11/1.16 | 3 | |
| 11 | J0673 | Proband | 13 | Sporadic | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.8/0.7 | −2/−2 | + / + | + /+ | 185/195 | 0.79/0.76 | 3 | |
| 12 | J1033 | Proband | 13 | Sporadic | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.5/0.9 | −1/−0.5 | + / + | −/− | 229/252 | 1.31/1.28 | 3 | |
| 13 | J1062 | Proband | 32 | Sporadic | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.5/0.4 | −2.375/ + 0.875 | + / + | + /+ | 119.6/134.3 | 0.76/0.86 | 3 | |
| 14 | RS04-1 | Proband | 16 | Familial | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.3/0.15 | −1.75/−2.5 | + / + | + /+ | 362/344 | 0.55/0.67 | 200 | |
| 14 | RS04-1 | Sibling | 9 | Familial | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.7/0.06 | −1.25/NA | + / + | + /+ | NA/NA | NA/NA | ||
| 15 | KINKI-113 | Proband | 50 | Sporadic | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.2/0.2 | −2.75/−1.625 | N/N | N/N | 370/370 | 0.78/0.8 | 30 | |
| 16 | NMSCHH011-01 | Sibling | 42 | Familial | 4 | c.214G>A | p.Glu72Lys | rs104894928 | CF/0.2 | NA/ + 0.25 | N/ + | N/+ | NA/344.5 | NA/0.76 | 10 | |
| 16 | NMSCHH011-02 | Proband | 47 | Familial | 4 | c.214G>A | p.Glu72Lys | rs104894928 | 0.15/0.3 | + 0.25/ + 0.75 | −/− | + /+ | 308/243 | 1.07/1.18 | 10 | |
| 17 | RS12-1 | Proband | 3 | Sporadic | 4 | c.218C>T | p.Ser73Leu | Novel | NA/NA | NA/NA | + / + | −/+ | ~0/~0 | NA/NA | L) retinal degeneration | |
| 18 | J0256 | Proband | 18 | Sporadic | 4 | c.266A>G | p.Tyr89Cys | rs61752060 | 0.4/0.08 | + 0.75/ + 1.5(IOL) | + / + | + /+ | 250/168 | 0.72/0.61 | 3 | L) Vx, IOL |
| 19 | J1224 | Proband | 6 | Sporadic | 4 | c.266A>G | p.Tyr89Cys | rs61752060 | 0.08/0.5 | + 6/ + 6 | + / + | + /- | NA/NA | NA/NA | ||
| 20 | Teik1051 | Proband | 49 | Sporadic | 4 | c.266A>G | p.Tyr89Cys | rs61752060 | 0.1/0.1 | + 5/ + 6 | −/− | + /+ | 309.5/137 | 0.59/0.53 | 10 | L) retinal degeneration |
| 21 | Teik1103 | Proband | 10 | Sporadic | 4 | c.266A>G | p.Tyr89Cys | rs61752060 | 0.03/0.6 | + 2.75/ + 0.25 | + / + | −/− | 38.3/35.1 | 1.25/1.12 | 3 | |
| 22 | KINKI-107-1 | Proband | 26 | Familial | 4 | c.267T>A | p.Tyr89* | rs61752061 | 0.4/0.3 | + 3/ + 2.75 | + / + | + /+ | 420/400 | 0.71/0.7 | 30 | |
| 22 | KINKI-107-2 | Sibling | 25 | Familial | 4 | c.267T>A | p.Tyr89* | rs61752061 | 0.3/0.3 | −0.5/−1 | + / + | −/− | 300/280 | 1.27/1.29 | 30 | |
| 23 | RS21-1 | Proband | 11 | Sporadic | 4 | c.285delG | p.Trp96Glyfs*30 | Novel | 0.2/0.6 | −1.5/0.75 | + / + | + /+ | 503/na | 0.75/NA | 200 | R) Vx |
| 24 | RS16-1 | Proband | 6 | Sporadic | 4 | c.301G>C | p.Ala101Pro | rs61752066 | 0.5/0.7 | + 0.75/ + 1 | + / + | −/− | NA/345 | NA/0.63 | 10 | B) ODRL |
| 25 | RS17-1 | Proband | 4 | Sporadic | 4 | c.304C>T | p.Arg102Trp | rs61752067 | 0.03/0.15 | NA/ + 3.125 | + / + | + /+ | 301/289 | 0.83/1.06 | b | |
| 26 | RS31-1 | Proband | 3 | Familial | 4 | c.304C>T | p.Arg102Trp | rs61752067 | 0.4/NA | + 1.375/NA | + / + | + /+ | 346/349 | 0.96/0.96 | 200 | L) Vx |
| 26 | RS31-2 | Sibling | 2mo | Familial | 4 | c.304C>T | p.Arg102Trp | rs61752067 | NA/NA | NA/NA | + / + | −/− | NA/NA | NA/NA | ||
| 27 | Teik1153 | Proband | 45 | Sporadic | 4 | c.304C>T | p.Arg102Trp | rs61752067 | 0.032/0.5 | + 6/ + 2 | 1/ + | −/− | 146.5/304 | 0.69/0.62 | b | |
| 28 | J1330 | Proband | 5 | Sporadic | 4 | c.305G>A | p.Arg102Gln | rs61752068 | 0.4/0.4 | + 9.5/ + 8 | + / + | + /+ | 462/607.8 | 0.79/0.74 | 200 | |
| 29 | RS23-1 | Proband | 1 | Familial | 4 | c.305G>A | p.Arg102Gln | rs61752068 | 0.7/0.06 | + 6.625(IOL)/ + 5(IOL) | + / + | + /+ | 43.8/43.8 | 0.55/0.69 | 200 | L) Vx, IOL |
| 29 | RS23-2 | Sibling | 4 | Familial | 4 | c.305G>A | p.Arg102Gln | rs61752068 | 0.3/0.12 | NA/NA | + / + | + /+ | NA/NA | NA/NA | ||
| 30 | RS08-1 | Proband | 2 | Sporadic | 4 | c.326G>C | p.Gly109Ala | Novel | 0.2/0.3 | + 2.25/ + 2.75 | + / + | + /+ | 184/208 | 0.87/0.77 | b | R) VH, Vx |
| 31 | MIYA003-1 | proband | 16 | Familial | 4 | c.330T>A | p.Cys110* | rs1801161 | 0.7/1.2 | −0.5/0 | + /+ | −/− | 377.8/302.3 | 0.78/0.72 | 3 | B) retinal fold, Vx, glaucoma |
| 31 | MIYA003-2 | Sibling | 14 | Familial | 4 | c.330T>A | p.Cys110* | rs1801161 | 0.9/0.7 | −0.25/ + 0.75 | + /+ | −/− | 87.8/83 | 0.77/0.74 | 3 | |
| 32 | RS18-1 | Proband | 8 | Familial | 5 | c.404G>A | p.Gly135Glu | Novel | 0.4/0.3 | + 4.475/ + 4.625 | + / + | −/− | NA/NA | NA/NA | ||
| 33 | J0690 | Proband | 25 | Familial | 5 | c.417G>T | p.Gln139His | Novel | 0.3/0.4 | −0.75/ + 0.25 | −/− | −/− | NA/NA | NA/NA | B) ODRL | |
| 34 | J0852 | Proband | 7 | Sporadic | 5 | c.422G>A | p.Arg141His | rs61752159 | 0.7/0.4 | + 1.5/ + 1.875 | + / + | −/− | NA/NA | NA/NA | ||
| 35 | MIE52 | Proband | 53 | Familial | 5 | c.438G>C | p.Glu146Asp | rs61753163 | 0.5/0.4 | −0.5/0 | −/− | −/− | 270/294 | 0.81/0.71 | 30 | B) macular degeration |
| 36 | J0892 | Proband | 19 | Sporadic | IVS5 | c.522+1G>A | USD | rs281865348 | 0.4/0.3 | + 4.25/ + 4.625 | + / + | + /+ | 172.1/130.6 | 0.45/0.5 | 3 | |
| 37 | NHO1025 | Proband | 54 | Sporadic | IVS5 | c.523-1G>A | USD | Novel | 0.2/0.15 | −3.5/−4.125 | + / + | −/− | 343.25/391.25 | 0.9/0.93 | 10 | |
| 38 | RS25-1 | Proband | 8 | Sporadic | 6 | c.544C>T | p.Arg182Cys | rs61753171 | 0.1/1.2 | + 2.625/−0.125 | + / + | + /+ | 283/318 | 0.74/0.85 | 200 | R) Vx |
| 39 | RS26-1 | Proband | 3mo | Sporadic | 6 | c.544C>T | p.Arg182Cys | rs61753171 | 0.5/0.2 | + 1(IOL)/−1(IOL) | + / + | + /+ | 175.5/200.8 | 0.69/0.64 | 30 | R) Vx IOL |
| 40 | RS27-1 | Proband | 9mo | Sporadic | 6 | c.544C>T | p.Arg182Cys | rs61753171 | 0.3/0.3 | −0.25/−2.75(aphakia) | + / + | + /+ | NA/NA | NA/NA | L) Vx | |
| 41 | J1461 | Proband | 38 | Sporadic | 6 | c.544C>T | p.Arg182Cys | rs61753171 | 0.4/0.4 | −6.5/−7.125 | + / + | + /+ | 360.5/348.3 | 0.78/0.68 | 200 | |
| 42 | KIN | Proband | 33 | Sporadic | 6 | c.574C>T | p.Pro192Ser | rs61753174 | 0.8/0.9 | −0.225/−0.25 | + / + | −/− | 290/280 | 0.86/0.82 | 30 | |
| 43 | RS07-1 | Proband | 16 | Sporadic | 6 | c.589C>T | p.Arg197Cys | rs281865354 | 0.1/0.09 | + 10/ + 9 | −/− | + /+ | 292/237 | 1/0.47 | 200 | |
| 44 | MIE49 | Proband | 43 | Sporadic | 6 | c.589C>T | p.Arg197Cys | rs281865354 | 0.2/0.3 | + 2/ + 1.5 | + / + | −/− | 290/280 | 0.45/0.5 | 30 | |
| 45 | RS32-1 | Proband | 5mo | Sporadic | 6 | c.589C>T | p.Arg197Cys | rs281865354 | Follow/Follow | NA/NA | + / + | + /+ | 257/313 | 0.95/0.74 | 200 | B) VH, R) Vx |
| 46 | RS10-1 | Proband | 28 | Sporadic | 6 | c.590G>A | p.Arg197His | rs281865355 | 0.06/0.08 | NA/NA | + / + | +/+ | NA/NA | NA/NA | ||
| 47 | RS19-1 | Proband | 43 | Familial | 6 | c.598C>T | p.Arg200Cys | rs281865357 | 0.2/0.05 | + 2.5/ + 2.5 | + / + | + /+ | 281/355 | 1.35/0.69 | b | |
| 48 | RS15-1 | Proband | 6 | Sporadic | 6 | c.599G>A | p.Arg200His | rs281865358 | 0.7/0.7 | + 0.5/−0.575 | + / + | −/− | 273.5/248 | 0.83/0.72 | b | |
| 49 | NTMC218 | Prpband | 43 | Sporadic | 6 | c.599G>A | p.Arg200His | rs281865358 | 0.1/0.1 | + 0.25/ + 0.25 | + / + | + /+ | 268/175.3 | 0.29/0.86 | 10 | B) Retinal hole |
| 50 | RS29-1 | Proband | 1 | Sporadic | 6 | c.608C>T | p.Pro203Leu | rs104894930 | 0.4/NLP | NA/NA(aphakia) | + / + | + /+ | NA/NA | NA/NA | L) proliferative vitreoretinopathy | |
| 51 | J0903 | Proband | 52 | Sporadic | 6 | c.608C>T | p.Pro203Leu | rs104894930 | 0.5/0.3 | −1.125/−1.25 | −/− | −/− | 174.3/292 | 0.83/0.77 | 3 | B) macular degeration |
| 52 | J0371 | Proband | 57 | Sporadic | 6 | c.625C>T | p.Arg209Cys | rs281865361 | CF/0.01 | NA/0.875 | + / + | −/− | 114/218 | 1.25/0.67 | 3 | |
| 53 | J0640 | Proband | 31 | Sporadic | 6 | c.625C>A | p.Arg209Ser | Novel | 0.3/1.2 | −1/−0.5 | + /− | −/− | 295/279 | 0.93/0.99 | b | |
| 54 | RS06-1 | Proband | 49 | Sporadic | 6 | c.638G>A | p.Arg213Gln | rs281865364 | 0.15/0.04 | −0.5/0 | −/− | + /+ | 312/332 | 0.77/0.59 | b | |
| 55 | RS05-1 | Proband | 7 | Sporadic | 6 | c.657C>G | p.Cys219Trp | CM101549a | 0.3/0.3 | + 0.25/−0.5 | −/− | + /+ | 344/400 | 0.69/0.71 | b | |
| 56 | MIYA020-1 | proband | 9 | Familial | 6 | c.667T>C | p.Cys223Arg | rs104894929 | 0.4/0.5 | −1/−1.5 | + / + | +/+ | 436/399.5 | 0.53/0.52 | 3 | L) retinal fold, Vx |
| 56 | MIYA020-2 | Sibling | 12 | Familial | 6 | c.667T>C | p.Cys223Arg | rs104894929 | 0.4/0.4 | −1.5/−1 | + /+ | −/+ | 342/382.8 | 0.55/0.52 | 3 | L) retinal fold, Vx |
B both eyes, CF counting finger, L left eye, IOL intraocular lens, mo month-old, NA not available, ODRL Oguchi disease-like retinal reflex, R right eye, USD undetermined splicing defect, VH vitreous hemorrahge, Vx vitrectomy, + present, − absent
aSNP (rs) ID is unavailable and ID of the Human Gene Mutation Database is shown
b20J (data are not interchangable with unit of cds/m2)
Pathogenicity assessment of the novel missense mutations in the RS1 gene
| Nucleotide change | Amino acid change | Folding energy value[ | Polyphen2 HumDIV[ | GERP++[ | REVEL[ | M-CAP[ | CADD[ | PROVEAN[ | SIFT[ | Mutation Accessor[ | FATHMM[ |
|---|---|---|---|---|---|---|---|---|---|---|---|
| c.35T>C | p.Leu12Pro | NA | −1.120 | ||||||||
| c.175T>G | p.Cys59Gly | 0.04 (weak) | |||||||||
| c.218C>T | p.Ser73Leu | 0.22 (weak) | |||||||||
| c.326G>C | p.Gly109Ala | 1 (severe) | −0.860 | 0.233 | 0.780 | ||||||
| c.404G>A | p.Gly135Glu | 1 (severe) | |||||||||
| c.417G>T | p.Gln139His | 1 (severe) | |||||||||
| c.625C>A | p.Arg209Ser | 0.74 (moderate) | −0.200 | 0.044 | 1.695 |
Underlined values are indicated as “pathogenic” according to the cutoff values (refs. [10–17])
NA not applicable
a75.4% of disease mutations but 10.9% of neutral variants
b≤1% percentile highest scores