| Literature DB >> 30648428 |
Alexandra Blenkinsop1, Mahesh Kb Parmar1, Babak Choodari-Oskooei1.
Abstract
BACKGROUND: The multi-arm multi-stage framework uses intermediate outcomes to assess lack-of-benefit of research arms at interim stages in randomised trials with time-to-event outcomes. However, the design lacks formal methods to evaluate early evidence of overwhelming efficacy on the definitive outcome measure. We explore the operating characteristics of this extension to the multi-arm multi-stage design and how to control the pairwise and familywise type I error rate. Using real examples and the updated nstage program, we demonstrate how such a design can be developed in practice.Entities:
Keywords: Multi-arm; efficacy stopping boundary; familywise error rate; lack-of-benefit boundary; multi-arm multi-stage; multi-stage
Mesh:
Year: 2019 PMID: 30648428 PMCID: PMC6442021 DOI: 10.1177/1740774518823551
Source DB: PubMed Journal: Clin Trials ISSN: 1740-7745 Impact factor: 2.486
Design specification for the six-arm four-stage STAMPEDE trial. is the target hazard ratio; and are the power and significance level, respectively, for stage j.
| Stage ( | Type | Outcome measure | HR[ |
|
| Critical HR | Control arm events |
|---|---|---|---|---|---|---|---|
| 1 | Activity | FFS | 0.75 | 95 | 0.50 | 1.0 | 113 |
| 2 | Activity | FFS | 0.75 | 95 | 0.25 | 0.92 | 216 |
| 3 | Activity | FFS | 0.75 | 95 | 0.10 | 0.89 | 334 |
| 4 | Efficacy | OS | 0.75 | 90 | 0.025 | – | 403 |
HR: hazard ratio; FFS: failure-free survival; OS: overall survival.
Simulation parameter values.
| Design parameter | Simulation inputs |
|---|---|
| Number of comparisons | 1, 2, 3, 4, 5 |
| Number of stages | 2, 3, 4 |
| Allocation ratio | 0.5, 0.6, 0.7, 0.8, 0.9, 1 |
| Final-stage significance level | 0.01, 0.025, 0.05 |
|
| 0.1, 0.2, 0.3, 0.4, 0.5 |
| Outcome measures | |
| Number of simulations | 3,000,000 |
Impact of the choice of efficacy boundary (EB) on the type I error rate (all SEs < 0.0002; lack-of-benefit boundaries = 0.25, 0.1, 0.025; allocation ratio = 1).
| Type I error rate | Power | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Rule |
|
|
| No EB | With EB | Inflation | Percentage | No EB | With EB | |
|
| Peto | 0.0005 | 0.0005 | 0.0250 | 0.0224 | 0.0225 | 0.0001 | 0 | 0.8771 | 0.8771 |
| Custom | 0.0005 | 0.0010 | 0.0250 | 0.0224 | 0.0225 | 0.0001 | 0 | 0.8771 | 0.8771 | |
| Custom | 0.0005 | 0.0020 | 0.0250 | 0.0224 | 0.0226 | 0.0002 | 1 | 0.8771 | 0.8771 | |
| Custom | 0.0005 | 0.0050 | 0.0250 | 0.0224 | 0.0229 | 0.0005 | 2 | 0.8771 | 0.8771 | |
| Custom | 0.0005 | 0.0100 | 0.0250 | 0.0224 | 0.0242 | 0.0018 | 8 | 0.8771 | 0.8771 | |
| Custom | 0.0010 | 0.0010 | 0.0250 | 0.0224 | 0.0227 | 0.0003 | 1 | 0.8771 | 0.8771 | |
| Custom | 0.0010 | 0.0020 | 0.0250 | 0.0224 | 0.0227 | 0.0003 | 1 | 0.8771 | 0.8771 | |
| Custom | 0.0010 | 0.0050 | 0.0250 | 0.0224 | 0.0230 | 0.0006 | 3 | 0.8771 | 0.8771 | |
| Custom | 0.0010 | 0.0100 | 0.0250 | 0.0224 | 0.0243 | 0.0019 | 8 | 0.8771 | 0.8771 | |
| O’Brien | 0.0022 | 0.0139 | 0.0250 | 0.0224 | 0.0261 | 0.0037 | 17 | 0.8771 | 0.8771 | |
|
| Peto | 0.0005 | 0.0005 | 0.0250 | 0.0250 | 0.0250 | 0.0000 | 0 | 0.8999 | 0.8999 |
| Custom | 0.0005 | 0.0010 | 0.0250 | 0.0250 | 0.0250 | 0.0000 | 0 | 0.8999 | 0.8999 | |
| Custom | 0.0005 | 0.0020 | 0.0250 | 0.0250 | 0.0251 | 0.0001 | 0 | 0.8999 | 0.8999 | |
| Custom | 0.0005 | 0.0050 | 0.0250 | 0.0250 | 0.0254 | 0.0004 | 2 | 0.8999 | 0.8999 | |
| Custom | 0.0005 | 0.0100 | 0.0250 | 0.0250 | 0.0267 | 0.0017 | 7 | 0.8999 | 0.8999 | |
| Custom | 0.0010 | 0.0010 | 0.0250 | 0.0250 | 0.0252 | 0.0002 | 1 | 0.8999 | 0.8999 | |
| Custom | 0.0010 | 0.0020 | 0.0250 | 0.0250 | 0.0255 | 0.0002 | 1 | 0.8999 | 0.8999 | |
| Custom | 0.0010 | 0.0050 | 0.0250 | 0.0250 | 0.0268 | 0.0005 | 2 | 0.8999 | 0.8999 | |
| Custom | 0.0010 | 0.0100 | 0.0250 | 0.0250 | 0.0287 | 0.0018 | 7 | 0.8999 | 0.8999 | |
| O’Brien | 0.0022 | 0.0139 | 0.0250 | 0.0250 | 0.0282 | 0.0037 | 13 | 0.8999 | 0.8999 | |
|
| Peto | 0.0005 | 0.0005 | 0.0250 | 0.0250 | 0.0255 | 0.0005 | 2 | 0.9002 | 0.9002 |
| Custom | 0.0005 | 0.0010 | 0.0250 | 0.0250 | 0.0258 | 0.0008 | 3 | 0.9002 | 0.9002 | |
| Custom | 0.0005 | 0.0020 | 0.0250 | 0.0250 | 0.0264 | 0.0014 | 6 | 0.9002 | 0.9002 | |
| Custom | 0.0005 | 0.0050 | 0.0250 | 0.0250 | 0.0285 | 0.0035 | 14 | 0.9002 | 0.9002 | |
| Custom | 0.0005 | 0.0100 | 0.0250 | 0.0250 | 0.0323 | 0.0073 | 29 | 0.9002 | 0.9002 | |
| Custom | 0.0010 | 0.0010 | 0.0250 | 0.0250 | 0.0261 | 0.0011 | 4 | 0.9002 | 0.9002 | |
| Custom | 0.0010 | 0.0020 | 0.0250 | 0.0250 | 0.0267 | 0.0017 | 7 | 0.9002 | 0.9002 | |
| Custom | 0.0010 | 0.0050 | 0.0250 | 0.0250 | 0.0287 | 0.0037 | 15 | 0.9002 | 0.9002 | |
| Custom | 0.0010 | 0.0100 | 0.0250 | 0.0250 | 0.0324 | 0.0074 | 30 | 0.9002 | 0.9002 | |
| O’Brien | <0.0001 | 0.0001 | 0.0250 | 0.0250 | 0.0250 | 0.0000 | 0 | 0.9002 | 0.9002 | |
Impact of the number of stages and arms on the FWER with Haybittle–Peto efficacy boundary (EB; p = 0.0005) (all SEs < 0.0002; lack-of-benefit boundaries as described in text; allocation ratio = 1 (for alternative allocation ratios in two-stage designs, see Supplemental Appendix E)).
| FWER | Per-pair power | Any-pair power | All-pair power | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Comparisons | Stages | No EB | With EB | Inflation | Percentage | No EB | With EB | No EB | With EB | No EB | With EB | |
|
| 1 | 2 | 0.0239 | 0.0240 | 0.0001 | 0 | 0.8940 | 0.8940 | 0.8940 | 0.8940 | 0.8940 | 0.8940 |
| 3 | 0.0224 | 0.0225 | 0.0001 | 0 | 0.8771 | 0.8771 | 0.8771 | 0.8771 | 0.8771 | 0.8771 | ||
| 4 | 0.0213 | 0.0217 | 0.0004 | 2 | 0.8553 | 0.8553 | 0.8553 | 0.8553 | 0.8553 | 0.8553 | ||
| 2 | 2 | 0.0437 | 0.0437 | 0.0000 | 0 | 0.8942 | 0.8942 | 0.9650 | 0.9650 | 0.8234 | 0.8234 | |
| 3 | 0.0410 | 0.0412 | 0.0002 | 0 | 0.8773 | 0.8773 | 0.9575 | 0.9575 | 0.7971 | 0.7971 | ||
| 4 | 0.0391 | 0.0397 | 0.0006 | 2 | 0.8554 | 0.8554 | 0.9475 | 0.9475 | 0.7634 | 0.7634 | ||
| 3 | 2 | 0.0605 | 0.0605 | 0.0000 | 0 | 0.8941 | 0.8941 | 0.9830 | 0.9830 | 0.7705 | 0.7705 | |
| 3 | 0.0570 | 0.0572 | 0.0002 | 0 | 0.8772 | 0.8772 | 0.9788 | 0.9788 | 0.7380 | 0.7380 | ||
| 4 | 0.0543 | 0.0552 | 0.0009 | 2 | 0.8554 | 0.8554 | 0.9731 | 0.9732 | 0.6971 | 0.6971 | ||
| 4 | 2 | 0.0752 | 0.0752 | 0.0000 | 0 | 0.8940 | 0.8940 | 0.9900 | 0.9900 | 0.7283 | 0.7283 | |
| 3 | 0.0708 | 0.0711 | 0.0003 | 0 | 0.8769 | 0.8769 | 0.9873 | 0.9873 | 0.6912 | 0.6912 | ||
| 4 | 0.0677 | 0.0688 | 0.0011 | 2 | 0.8552 | 0.8552 | 0.9837 | 0.9837 | 0.6458 | 0.6458 | ||
| 5 | 2 | 0.0882 | 0.0882 | 0.0000 | 0 | 0.8939 | 0.8939 | 0.9934 | 0.9934 | 0.6934 | 0.6934 | |
| 3 | 0.0833 | 0.0837 | 0.0004 | 0 | 0.8769 | 0.8769 | 0.9915 | 0.9915 | 0.6537 | 0.6537 | ||
| 4 | 0.0798 | 0.0811 | 0.0013 | 2 | 0.8553 | 0.8553 | 0.9891 | 0.9891 | 0.6049 | 0.6049 | ||
|
| 1 | 2 | 0.0250 | 0.0253 | 0.0003 | 1 | 0.9001 | 0.9001 | 0.9001 | 0.9001 | 0.9001 | 0.9001 |
| 3 | 0.0250 | 0.0255 | 0.0005 | 2 | 0.9002 | 0.9002 | 0.9002 | 0.9002 | 0.9002 | 0.9002 | ||
| 4 | 0.0250 | 0.0260 | 0.0010 | 4 | 0.9000 | 0.9000 | 0.9000 | 0.9000 | 0.9000 | 0.9000 | ||
| 2 | 2 | 0.0455 | 0.0460 | 0.0005 | 1 | 0.9001 | 0.9001 | 0.9677 | 0.9677 | 0.8326 | 0.8326 | |
| 3 | 0.0455 | 0.0463 | 0.0008 | 2 | 0.9002 | 0.9002 | 0.9676 | 0.9676 | 0.8327 | 0.8327 | ||
| 4 | 0.0455 | 0.0472 | 0.0017 | 4 | 0.9000 | 0.9000 | 0.9676 | 0.9676 | 0.8325 | 0.8325 | ||
| 3 | 2 | 0.0628 | 0.0635 | 0.0007 | 1 | 0.9001 | 0.9001 | 0.9845 | 0.9845 | 0.7818 | 0.7818 | |
| 3 | 0.0627 | 0.0644 | 0.0017 | 3 | 0.9001 | 0.9001 | 0.9843 | 0.9843 | 0.7818 | 0.7818 | ||
| 4 | 0.0627 | 0.0649 | 0.0022 | 4 | 0.9001 | 0.9001 | 0.9845 | 0.9845 | 0.7816 | 0.7816 | ||
| 4 | 2 | 0.0780 | 0.0792 | 0.0012 | 2 | 0.9001 | 0.9001 | 0.9909 | 0.9909 | 0.7413 | 0.7413 | |
| 3 | 0.0780 | 0.0798 | 0.0018 | 2 | 0.9000 | 0.9000 | 0.9909 | 0.9909 | 0.7412 | 0.7412 | ||
| 4 | 0.0780 | 0.0809 | 0.0029 | 4 | 0.9000 | 0.9000 | 0.9910 | 0.9910 | 0.7410 | 0.7410 | ||
| 5 | 2 | 0.0916 | 0.0927 | 0.0011 | 1 | 0.9000 | 0.9000 | 0.9941 | 0.9941 | 0.7076 | 0.7076 | |
| 3 | 0.0915 | 0.0938 | 0.0023 | 3 | 0.9000 | 0.9000 | 0.9940 | 0.9940 | 0.7079 | 0.7079 | ||
| 4 | 0.0915 | 0.0950 | 0.0035 | 4 | 0.9000 | 0.9000 | 0.9941 | 0.9941 | 0.7076 | 0.7077 | ||
FWER: familywise error rate.
Impact on operating characteristics of STAMPEDE and ICON5 when controlling the FWER at 2.5% with the addition of efficacy boundaries (EBs). The designs with no EBs assessed non-binding lack-of-benefit only at interim analyses (ICON5: , STAMPEDE: ).
| No FWER control | FWER controlled at 2.5% | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Example trial | Measure | No EB | HP EB ( | OBF EB | Custom EB[ | No EB | HP EB ( | OBF EB | Custom EB[ |
| ICON5 |
| 0.025 | 0.025 | 0.025 | 0.025 | 0.0073 | 0.0069 | 0.0073 | 0.0064 |
| Control arm events | 424 | 424 | 424 | 424 | 527 | 532 | 527 | 538 | |
| Power | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 | |
| PWER | 0.0250 | 0.0251 | 0.0251 | 0.0256 | 0.0073 | 0.0073 | 0.0073 | 0.0072 | |
| FWER | 0.0781[ | 0.0782 | 0.0781 | 0.0798 | 0.0250 | 0.0250 | 0.0250 | 0.0250 | |
| STAMPEDE |
| 0.025 | 0.025 | 0.025 | 0.025 | 0.0055 | 0.0043 | 0.0055 | 0.0026 |
| Control arm events | 403 | 403 | 403 | 403 | 555 | 579 | 555 | 626 | |
| Power | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | 0.90 | |
| PWER | 0.0250 | 0.0257 | 0.0252 | 0.0266 | 0.0055 | 0.0054 | 0.0055 | 0.0054 | |
| FWER | 0.1032[ | 0.1059 | 0.1039 | 0.1093 | 0.0250 | 0.0250 | 0.0250 | 0.0250 | |
FWER: familywise error rate; HP: Haybittle–Peto; OBF: O’Brien–Fleming; PWER: pairwise error rate.
ICON5: , STAMPEDE: , .
The actual FWER in both trials differed due to the research arms being dropped, as described in the text.
Figure 1.Choosing an efficacy stopping rule based on the design and willingness to modify to control FWER. HP is the Haybittle–Peto rule (p = 0.0005) and OBF is an O’Brien–Fleming type rule. ‘Any’ indicates that the design is not vulnerable to inflation, so the rule used can be flexible; ‘custom’ indicates that a more liberal boundary than Haybittle–Peto can be applied.