Literature DB >> 30643256

Multivariate genome-wide analyses of the well-being spectrum.

Michel G Nivard1,2, Meike Bartels3,4,5, Bart M L Baselmans6,7, Rick Jansen8,9, Hill F Ip6, Jenny van Dongen6,7, Abdel Abdellaoui7,10, Margot P van de Weijer6, Yanchun Bao11, Melissa Smart11, Meena Kumari11, Gonneke Willemsen6,7,9, Jouke-Jan Hottenga6,7,9, Dorret I Boomsma6,7,9, Eco J C de Geus6,7,9.   

Abstract

We introduce two novel methods for multivariate genome-wide-association meta-analysis (GWAMA) of related traits that correct for sample overlap. A broad range of simulation scenarios supports the added value of our multivariate methods relative to univariate GWAMA. We applied the novel methods to life satisfaction, positive affect, neuroticism, and depressive symptoms, collectively referred to as the well-being spectrum (Nobs = 2,370,390), and found 304 significant independent signals. Our multivariate approaches resulted in a 26% increase in the number of independent signals relative to the four univariate GWAMAs and in an ~57% increase in the predictive power of polygenic risk scores. Supporting transcriptome- and methylome-wide analyses (TWAS and MWAS, respectively) uncovered an additional 17 and 75 independent loci, respectively. Bioinformatic analyses, based on gene expression in brain tissues and cells, showed that genes differentially expressed in the subiculum and GABAergic interneurons are enriched in their effect on the well-being spectrum.

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Year:  2019        PMID: 30643256     DOI: 10.1038/s41588-018-0320-8

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  73 in total

1.  Causal influences of neuroticism on mental health and cardiovascular disease.

Authors:  Fuquan Zhang; Ancha Baranova; Chao Zhou; Hongbao Cao; Jiu Chen; Xiangrong Zhang; Mingqing Xu
Journal:  Hum Genet       Date:  2021-05-11       Impact factor: 4.132

2.  Biological insights into multiple birth: genetic findings from UK Biobank.

Authors:  Hamdi Mbarek; Margot P van de Weijer; Mathijs D van der Zee; Hill F Ip; Jeffrey J Beck; Abdel Abdellaoui; Erik A Ehli; Gareth E Davies; Bart M L Baselmans; Michel G Nivard; Meike Bartels; Eco J de Geus; Dorret I Boomsma
Journal:  Eur J Hum Genet       Date:  2019-02-13       Impact factor: 4.246

Review 3.  Deconstructing the sources of genotype-phenotype associations in humans.

Authors:  Alexander I Young; Stefania Benonisdottir; Molly Przeworski; Augustine Kong
Journal:  Science       Date:  2019-09-27       Impact factor: 47.728

4.  Multi-trait Genome-Wide Analyses of the Brain Imaging Phenotypes in UK Biobank.

Authors:  Chong Wu
Journal:  Genetics       Date:  2020-06-15       Impact factor: 4.562

Review 5.  Using genetics for social science.

Authors:  K Paige Harden; Philipp D Koellinger
Journal:  Nat Hum Behav       Date:  2020-05-11

6.  The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls.

Authors:  Jonathan R I Coleman; Héléna A Gaspar; Julien Bryois; Gerome Breen
Journal:  Biol Psychiatry       Date:  2019-11-01       Impact factor: 13.382

7.  Genetic analyses identify widespread sex-differential participation bias.

Authors:  Nicola Pirastu; Mattia Cordioli; Michel G Nivard; John R B Perry; Andrea Ganna; Priyanka Nandakumar; Gianmarco Mignogna; Abdel Abdellaoui; Benjamin Hollis; Masahiro Kanai; Veera M Rajagopal; Pietro Della Briotta Parolo; Nikolas Baya; Caitlin E Carey; Juha Karjalainen; Thomas D Als; Matthijs D Van der Zee; Felix R Day; Ken K Ong; Takayuki Morisaki; Eco de Geus; Rino Bellocco; Yukinori Okada; Anders D Børglum; Peter Joshi; Adam Auton; David Hinds; Benjamin M Neale; Raymond K Walters
Journal:  Nat Genet       Date:  2021-04-22       Impact factor: 38.330

8.  Cell-type-specific meQTLs extend melanoma GWAS annotation beyond eQTLs and inform melanocyte gene-regulatory mechanisms.

Authors:  Tongwu Zhang; Jiyeon Choi; Ramile Dilshat; Berglind Ósk Einarsdóttir; Michael A Kovacs; Mai Xu; Michael Malasky; Salma Chowdhury; Kristine Jones; D Timothy Bishop; Alisa M Goldstein; Mark M Iles; Maria Teresa Landi; Matthew H Law; Jianxin Shi; Eiríkur Steingrímsson; Kevin M Brown
Journal:  Am J Hum Genet       Date:  2021-07-21       Impact factor: 11.025

9.  Identifying loci with different allele frequencies among cases of eight psychiatric disorders using CC-GWAS.

Authors:  Wouter J Peyrot; Alkes L Price
Journal:  Nat Genet       Date:  2021-03-08       Impact factor: 38.330

Review 10.  Paternal transgenerational epigenetic mechanisms mediating stress phenotypes of offspring.

Authors:  Ashley M Cunningham; Deena M Walker; Eric J Nestler
Journal:  Eur J Neurosci       Date:  2019-10-17       Impact factor: 3.386

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