Literature DB >> 30642177

Topological Analysis of Transthyretin Disassembly Mechanism: Surface-Induced Dissociation Reveals Hidden Reaction Pathways.

Mehdi Shirzadeh1, Christopher D Boone1, Arthur Laganowsky1, David H Russell1.   

Abstract

The proposed mechanism of fibril formation of transthyretin (TTR) involves self-assembly of partially unfolded monomers. However, the mechanism(s) of disassembly to monomer and potential intermediates involved in this process are not fully understood. In this study, native mass spectrometry and surface-induced dissociation (SID) are used to investigate the TTR disassembly mechanism(s) and the effects of temperature and ionic strength on the kinetics of TTR complex formation. Results from the SID of hybrid tetramers formed during subunit exchange provide strong evidence for a two-step mechanism whereby the tetramer dissociates to dimers that then dissociate to monomers. Also, the SID results uncovered a hidden pathway in which a specific topology of the hybrid tetramer is directly produced by assembly of dimers in the early steps of TTR disassembly. Implementation of SID to dissect protein topology during subunit exchange provides unique opportunities to gain unparalleled insight into disassembly pathways.

Entities:  

Year:  2019        PMID: 30642177      PMCID: PMC6464633          DOI: 10.1021/acs.analchem.8b05066

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  43 in total

Review 1.  Macromolecular crowding: an important but neglected aspect of the intracellular environment.

Authors:  R J Ellis
Journal:  Curr Opin Struct Biol       Date:  2001-02       Impact factor: 6.809

2.  An engineered transthyretin monomer that is nonamyloidogenic, unless it is partially denatured.

Authors:  X Jiang; C S Smith; H M Petrassi; P Hammarström; J T White; J C Sacchettini; J W Kelly
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

Review 3.  Fabrication of novel biomaterials through molecular self-assembly.

Authors:  Shuguang Zhang
Journal:  Nat Biotechnol       Date:  2003-10       Impact factor: 54.908

Review 4.  Protein aggregation and aggregate toxicity: new insights into protein folding, misfolding diseases and biological evolution.

Authors:  Massimo Stefani; Christopher M Dobson
Journal:  J Mol Med (Berl)       Date:  2003-08-27       Impact factor: 4.599

5.  Transthyretin slowly exchanges subunits under physiological conditions: A convenient chromatographic method to study subunit exchange in oligomeric proteins.

Authors:  F Schneider; P Hammarström; J W Kelly
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

6.  The tetrameric protein transthyretin dissociates to a non-native monomer in solution. A novel model for amyloidogenesis.

Authors:  A Quintas; M J Saraiva; R M Brito
Journal:  J Biol Chem       Date:  1999-11-12       Impact factor: 5.157

7.  Origin of asymmetric charge partitioning in the dissociation of gas-phase protein homodimers.

Authors:  John C Jurchen; Evan R Williams
Journal:  J Am Chem Soc       Date:  2003-03-05       Impact factor: 15.419

8.  Subunit exchange of multimeric protein complexes. Real-time monitoring of subunit exchange between small heat shock proteins by using electrospray mass spectrometry.

Authors:  Frank Sobott; Justin L P Benesch; Elizabeth Vierling; Carol V Robinson
Journal:  J Biol Chem       Date:  2002-07-23       Impact factor: 5.157

9.  Quantitative determination of noncovalent binding interactions using automated nanoelectrospray mass spectrometry.

Authors:  Sheng Zhang; Colleen K Van Pelt; David B Wilson
Journal:  Anal Chem       Date:  2003-07-01       Impact factor: 6.986

10.  Arrangement of subunits and ordering of beta-strands in an amyloid sheet.

Authors:  Ahmed A Serag; Christian Altenbach; Mari Gingery; Wayne L Hubbell; Todd O Yeates
Journal:  Nat Struct Biol       Date:  2002-10
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  15 in total

1.  Enhanced Characterization of Membrane Protein Complexes by Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Sarah N Sipe; John W Patrick; Arthur Laganowsky; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2019-12-10       Impact factor: 6.986

2.  New insights into the metal-induced oxidative degradation pathways of transthyretin.

Authors:  Michael L Poltash; Mehdi Shirzadeh; Jacob W McCabe; Zahra Moghadamchargari; Arthur Laganowsky; David H Russell
Journal:  Chem Commun (Camb)       Date:  2019-04-02       Impact factor: 6.222

3.  First-Principles Collision Cross Section Measurements of Large Proteins and Protein Complexes.

Authors:  Jacob W McCabe; Christopher S Mallis; Klaudia I Kocurek; Michael L Poltash; Mehdi Shirzadeh; Michael J Hebert; Liqi Fan; Thomas E Walker; Xueyun Zheng; Ting Jiang; Shiyu Dong; Cheng-Wei Lin; Arthur Laganowsky; David H Russell
Journal:  Anal Chem       Date:  2020-07-28       Impact factor: 6.986

4.  Structural Analysis of the Effect of a Dual-FLAG Tag on Transthyretin.

Authors:  Mehdi Shirzadeh; Michael L Poltash; Arthur Laganowsky; David H Russell
Journal:  Biochemistry       Date:  2020-03-02       Impact factor: 3.162

5.  Design and Performance of a Second-Generation Surface-Induced Dissociation Cell for Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of Native Protein Complexes.

Authors:  Dalton T Snyder; Erin Panczyk; Alyssa Q Stiving; Joshua D Gilbert; Arpad Somogyi; Desmond Kaplan; Vicki Wysocki
Journal:  Anal Chem       Date:  2019-10-22       Impact factor: 6.986

6.  A Tilted Surface and Ion Carpet Array for SID.

Authors:  Alyssa Q Stiving; Joshua D Gilbert; Benjamin J Jones; Vicki H Wysocki
Journal:  J Am Soc Mass Spectrom       Date:  2019-12-24       Impact factor: 3.109

7.  Intrinsic GTPase Activity of K-RAS Monitored by Native Mass Spectrometry.

Authors:  Zahra Moghadamchargari; Jamison Huddleston; Mehdi Shirzadeh; Xueyun Zheng; David E Clemmer; Frank M Raushel; David H Russell; Arthur Laganowsky
Journal:  Biochemistry       Date:  2019-07-22       Impact factor: 3.162

8.  Native IM-Orbitrap MS: Resolving What Was Hidden.

Authors:  Michael L Poltash; Jacob W McCabe; Mehdi Shirzadeh; Arthur Laganowsky; David H Russell
Journal:  Trends Analyt Chem       Date:  2019-05-31       Impact factor: 12.296

9.  Ion Activation Methods for Peptides and Proteins.

Authors:  Luis A Macias; Inês C Santos; Jennifer S Brodbelt
Journal:  Anal Chem       Date:  2019-11-12       Impact factor: 6.986

Review 10.  THE IMS PARADOX: A PERSPECTIVE ON STRUCTURAL ION MOBILITY-MASS SPECTROMETRY.

Authors:  Jacob W McCabe; Michael J Hebert; Mehdi Shirzadeh; Christopher S Mallis; Joanna K Denton; Thomas E Walker; David H Russell
Journal:  Mass Spectrom Rev       Date:  2020-07-01       Impact factor: 10.946

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