Literature DB >> 30638669

miRNA Targeting: Growing beyond the Seed.

Laura B Chipman1, Amy E Pasquinelli2.   

Abstract

miRNAs are small RNAs that guide Argonaute proteins to specific target mRNAs to repress their translation and stability. Canonically, miRNA targeting is reliant on base pairing of the seed region, nucleotides 2-7, of the miRNA to sites in mRNA 3' untranslated regions. Recently, the 3' half of the miRNA has gained attention for newly appreciated roles in regulating target specificity and regulation. In addition, the extent of pairing to the miRNA 3' end can influence the stability of the miRNA itself. These findings highlight the importance of sequences beyond the seed in controlling the function and existence of miRNAs.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  miRNA family; miRNA targeting; microRNA; seed pairing

Mesh:

Substances:

Year:  2019        PMID: 30638669      PMCID: PMC7083087          DOI: 10.1016/j.tig.2018.12.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  43 in total

Review 1.  Interplay between miRNAs and human diseases.

Authors:  Prosenjit Paul; Anindya Chakraborty; Debasree Sarkar; Malobika Langthasa; Musfhia Rahman; Minakshi Bari; Rk Sanamacha Singha; Arup Kumar Malakar; Supriyo Chakraborty
Journal:  J Cell Physiol       Date:  2017-04-27       Impact factor: 6.384

Review 2.  Metazoan MicroRNAs.

Authors:  David P Bartel
Journal:  Cell       Date:  2018-03-22       Impact factor: 41.582

3.  Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.

Authors:  Igor Ulitsky; Alena Shkumatava; Calvin H Jan; Hazel Sive; David P Bartel
Journal:  Cell       Date:  2011-12-23       Impact factor: 41.582

4.  miR-148 targets human DNMT3b protein coding region.

Authors:  Anja M Duursma; Martijn Kedde; Mariette Schrier; Carlos le Sage; Reuven Agami
Journal:  RNA       Date:  2008-03-26       Impact factor: 4.942

5.  A Dynamic Search Process Underlies MicroRNA Targeting.

Authors:  Nicole T Schirle; Malwina Szczepaniak; Stanley D Chandradoss; Ian J MacRae; Chirlmin Joo
Journal:  Cell       Date:  2015-07-02       Impact factor: 41.582

6.  Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target.

Authors:  Valentina Libri; Aleksandra Helwak; Pascal Miesen; Diwakar Santhakumar; Jessica G Borger; Grzegorz Kudla; Finn Grey; David Tollervey; Amy H Buck
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-19       Impact factor: 11.205

7.  miRBase: from microRNA sequences to function.

Authors:  Ana Kozomara; Maria Birgaoanu; Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Authors:  Sung Wook Chi; Julie B Zang; Aldo Mele; Robert B Darnell
Journal:  Nature       Date:  2009-06-17       Impact factor: 49.962

9.  Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs.

Authors:  Shuo Gu; Lan Jin; Feijie Zhang; Peter Sarnow; Mark A Kay
Journal:  Nat Struct Mol Biol       Date:  2009-02-01       Impact factor: 15.369

10.  miRNA-target chimeras reveal miRNA 3'-end pairing as a major determinant of Argonaute target specificity.

Authors:  Michael J Moore; Troels K H Scheel; Joseph M Luna; Christopher Y Park; John J Fak; Eiko Nishiuchi; Charles M Rice; Robert B Darnell
Journal:  Nat Commun       Date:  2015-11-25       Impact factor: 14.919

View more
  50 in total

1.  GNG12 Targeted by miR-876-5p Contributes to Glioma Progression Through the Activation of the PI3K/AKT Signaling Pathway.

Authors:  Ling Li; Qiuying Zhang; Leyong Yuan; Yanlong Yang; Xiaobo Wang; Fangfang Liu; Yang Liu; Mingshui Xie
Journal:  J Mol Neurosci       Date:  2022-01-27       Impact factor: 3.444

Review 2.  Learning noncoding RNA biology from viruses.

Authors:  Demián Cazalla
Journal:  Mamm Genome       Date:  2021-09-07       Impact factor: 2.957

Review 3.  The noncoding genome and hearing loss.

Authors:  Karen B Avraham; Lama Khalaily; Yael Noy; Lara Kamal; Tal Koffler-Brill; Shahar Taiber
Journal:  Hum Genet       Date:  2021-09-07       Impact factor: 4.132

4.  Protective effect of LNA-anti-miR-132 therapy on liver fibrosis in mice.

Authors:  Fatemeh Momen-Heravi; Donna Catalano; Austin Talis; Gyongyi Szabo; Shashi Bala
Journal:  Mol Ther Nucleic Acids       Date:  2021-05-14       Impact factor: 10.183

5.  Ovule siRNAs methylate protein-coding genes in trans.

Authors:  Diane Burgess; Hiu Tung Chow; Jeffrey W Grover; Michael Freeling; Rebecca A Mosher
Journal:  Plant Cell       Date:  2022-09-27       Impact factor: 12.085

6.  Pleiotropic Locus 15q24.1 Reveals a Gender-Specific Association with Neovascular but Not Atrophic Age-Related Macular Degeneration (AMD).

Authors:  Christina Kiel; Tobias Strunz; Felix Grassmann; Bernhard H F Weber
Journal:  Cells       Date:  2020-10-08       Impact factor: 6.600

Review 7.  miRNA dysregulation is an emerging modulator of genomic instability.

Authors:  Ana P Ferragut Cardoso; Mayukh Banerjee; Alexandra N Nail; Angeliki Lykoudi; J Christopher States
Journal:  Semin Cancer Biol       Date:  2021-05-09       Impact factor: 15.707

Review 8.  Regulatory Non-coding RNAs in Atherosclerosis.

Authors:  Andreas Schober; Saffiyeh Saboor Maleki; Maliheh Nazari-Jahantigh
Journal:  Handb Exp Pharmacol       Date:  2022

9.  A noncanonical microRNA derived from the snaR-A noncoding RNA targets a metastasis inhibitor.

Authors:  Daniel Stribling; Yi Lei; Casey M Guardia; Lu Li; Christopher J Fields; Pawel Nowialis; Rene Opavsky; Rolf Renne; Mingyi Xie
Journal:  RNA       Date:  2021-04-01       Impact factor: 5.636

10.  ENTPD5: identification of splicing variants and their impact on cancer survival.

Authors:  Rafael Paschoal de Campos; Marcia Rosângela Wink; Guido Lenz
Journal:  Purinergic Signal       Date:  2021-06-02       Impact factor: 3.765

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.