| Literature DB >> 30637102 |
Lu Tang1, Yan Ma1, Xiao-Lu Liu1, Lu Chen1, Dong-Sheng Fan1.
Abstract
BACKGROUND: SOD1 mutations are the most common cause of amyotrophic lateral sclerosis (ALS) in non-Caucasian patients. Detailed natural history profiles of SOD1-mutant patients will be beneficial for the strategy and interpretation of future SOD1-targeted clinical practice.Entities:
Keywords: Amyotrophic lateral sclerosis; Gender difference; Natural history studies; SOD1 mutations
Year: 2019 PMID: 30637102 PMCID: PMC6325854 DOI: 10.1186/s40035-018-0142-8
Source DB: PubMed Journal: Transl Neurodegener ISSN: 2047-9158 Impact factor: 8.014
Novel variants of the SOD1 gene found in the present study but absent in reference databases
| Exon | DNA changes | Amino acid changes | Case count | Hereditary | ACMG score | Any report in the same codon from reference database | Found in ExAC or 1000G | Mutation prediction | ||
|---|---|---|---|---|---|---|---|---|---|---|
| MutationTaster | PolyPhen-2 | PROVEAN | ||||||||
| Exon 1 | c.61 T > G | p.Phe21Val | 1 | fALS | VUS | p.Phe21Cys | neither | disease causing | probably damaging | damaging |
| Exon 2 | c.97 T > G | p.Trp33Gly | 1 | sALS | VUS | none | neither | polymorphism | benign | tolerated |
| Exon 4 | c.240G > T | p.Arg80Ser | 1 | fALS | VUS | none | neither | disease causing | probably damaging | damaging |
| Exon 4 | c.256G > T | p.Gly86Cys | 1 | fALS | VUS | p.Gly86Arg/p.Gly86Ser | neither | disease causing | probably damaging | damaging |
| Exon 4 | c.268_269delinsTT | p.Ala90Phe | 1 | fALS | VUS | p.Ala90Thr/p.Ala90Val | neither | disease causing | probably damaging | damaging |
| Exon 4 | c.284 T > G | p.Val95Gly | 1 | sALS | Likely Pathogenic | p.Val95Ala | neither | disease causing | probably damaging | damaging |
| Exon 5 | c.397G > T | p.Glu133Ter | 1 | sALS | Likely Pathogenic | p.Glu133Lys/ p.Glu133insTT/p.Glu133delGAA | neither | disease causing | NA | NA |
ACMG, American College of Medical Genetics and Genomics. ExAC, Exome Aggregation Consortium. VUS, variant of unknown significance
Fig. 1Age at onset (AAO) of patients with SOD1 mutations. a Plot of rank ordered SOD1-mutant patients showing the median AAO of 43 years. b Plot comparing the AAO among patients carrying mutations in different exons of the SOD1 gene. Patients (n = 24) harbouring mutations in exon 2 were older than those (n = 18) harbouring mutations in exon 4 (46.63 years vs 37.75, p = 0.002). c Plots comparing fALS patients with sALS patients and (d) plots comparing male patients with female patients; neither comparison identified a significant difference in AAO (p = 0.64 and 0.53, respectively)
Demographic and clinical features of familial and sporadic ALS patients with SOD1 mutations
| Case count, n (%) | Bulbar site at onset, n (%) | AAO, years, mean (SD) | Delay, months, median (IQR) | Disease progression, ΔFS, median (IQR) | Survival time, months, mean (95% Cl)& | |
|---|---|---|---|---|---|---|
| Total | 66 | 5(8.1%) | 43.92(9.24) | 14.50(6.00–36.50) | 0.33 (0.15–0.90) | 97.08 (75.61–118.54) |
| Missing | – | 4 | 2 | 2 | 9 | 5 |
| fALS | 47(71.2%) | 3(7.0%) | 43.49(7.50) | 20.00(6.50–39.00) | 0.27(0.15–0.87) | 87.46(61.74–113.18) |
| sALS | 19(28.8%) | 2(10.5%) | 44.95(12.63) | 8.00(6.00–25.00) | 0.58(0.14–0.98) | 121.49(86.24–156.74) |
| – | 0.638 | 0.64 | 0.26 | 0.59 | 0.38 | |
| Male | 35(53.8%) | 4(11.8%) | 44.62(10.38) | 9.50(4.75–24.25) | 0.55(0.24–0.94) | 57.40(38.89–75.91) |
| Female | 30(46.2%) | 1(3.6%) | 43.13(7.84) | 24.00(9.50–47.50) | 0.19(0.06–0.90) | 125.64(99.83–151.45) |
| p value | -# | 0.366 | 0.525 |
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AAO, age at onset. Delay, diagnostic delay from onset
& Due to more than 50% of subjects being censored (lost to follow-up or still surviving) in the sALS and female groups, the mean (95% CI) survival time was calculated
# There was one case without gender information
*In bold with statistical significance at p < 0.05
Clinical features according to the mutation/variant type in SOD1-mutant patients
*There was one case with missing data. ** There were two cases with missing data
& There was one surviving case. && There were two surviving cases. &&& There were three surviving cases. &&&&& There were five surviving cases
† The interquartile ranges (IQRs) of age at onset and diagnostic delay were calculated and determined to be 38.25–50 years and 6–36.50 months, respectively. Values greater than the third quartile (75%) are highlighted in green, whereas values less than the first quartile (25%) are highlighted in yellow
¶ The disease progression was calculated as ΔFS = (48 - ALS-FRSR at enrolment) / (diagnostic delay in months). Based on references [21] and [22], values less than 0.50 were defined as slow progression and highlighted in green, whereas values greater than 1.00 were defined as fast progression and highlighted in yellow
# For disease duration, there were 61 available cases, and 60% were censored (lost to follow-up or still surviving). Therefore, 25% of the patients survived less than 31 months, and 50% of the patients survived less than 89 months. Values greater than the second quartile (89 months) are highlighted in light green, whereas values less than the first quartile (31 months) are highlighted in yellow
Fig. 2Survival analysis of fALS and sALS patients carrying SOD1 mutations and comparison between genders. a Plot of survival probabilities for fALS vs sALS patients with SOD1 mutations; no significant differences were observed (87.5 vs 121.5, p = 0.382). b Plot of survival probabilities between genders, indicating that females had a longer survival time than males (125.64 vs 57.40, p = 0.006). Another plot (c) was made to compare the survival function between genders in fALS and sALS patients; a significant difference of p = 0.035 was observed