Literature DB >> 30624911

Mechanistic Landscape of Membrane-Permeabilizing Peptides.

Shantanu Guha1, Jenisha Ghimire1, Eric Wu1, William C Wimley1.   

Abstract

Membrane permeabilizing peptides (MPPs) are as ubiquitous as the lipid bilayer membranes they act upon. Produced by all forms of life, most membrane permeabilizing peptides are used offensively or defensively against the membranes of other organisms. Just as nature has found many uses for them, translational scientists have worked for decades to design or optimize membrane permeabilizing peptides for applications in the laboratory and in the clinic ranging from antibacterial and antiviral therapy and prophylaxis to anticancer therapeutics and drug delivery. Here, we review the field of membrane permeabilizing peptides. We discuss the diversity of their sources and structures, the systems and methods used to measure their activities, and the behaviors that are observed. We discuss the fact that "mechanism" is not a discrete or a static entity for an MPP but rather the result of a heterogeneous and dynamic ensemble of structural states that vary in response to many different experimental conditions. This has led to an almost complete lack of discrete three-dimensional active structures among the thousands of known MPPs and a lack of useful or predictive sequence-structure-function relationship rules. Ultimately, we discuss how it may be more useful to think of membrane permeabilizing peptides mechanisms as broad regions of a mechanistic landscape rather than discrete molecular processes.

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Year:  2019        PMID: 30624911      PMCID: PMC9235363          DOI: 10.1021/acs.chemrev.8b00520

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   72.087


  510 in total

1.  APD: the Antimicrobial Peptide Database.

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Review 2.  Cell-penetrating peptides as vectors for peptide, protein and oligonucleotide delivery.

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Journal:  Curr Opin Pharmacol       Date:  2006-07-24       Impact factor: 5.547

Review 3.  Viroporins customize host cells for efficient viral propagation.

Authors:  Kristina M Giorda; Daniel N Hebert
Journal:  DNA Cell Biol       Date:  2013-08-14       Impact factor: 3.311

4.  The C-terminal region of nisin is responsible for the initial interaction of nisin with the target membrane.

Authors:  E Breukink; C van Kraaij; R A Demel; R J Siezen; O P Kuipers; B de Kruijff
Journal:  Biochemistry       Date:  1997-06-10       Impact factor: 3.162

5.  Quantification of leakage from large unilamellar lipid vesicles by fluorescence correlation spectroscopy.

Authors:  Kasper Kristensen; Jonas R Henriksen; Thomas L Andresen
Journal:  Biochim Biophys Acta       Date:  2014-08-15

6.  Vesicles of variable sizes produced by a rapid extrusion procedure.

Authors:  L D Mayer; M J Hope; P R Cullis
Journal:  Biochim Biophys Acta       Date:  1986-06-13

7.  Antimicrobial Peptides Share a Common Interaction Driven by Membrane Line Tension Reduction.

Authors:  J Michael Henderson; Alan J Waring; Frances Separovic; Ka Yee C Lee
Journal:  Biophys J       Date:  2016-11-15       Impact factor: 4.033

8.  Protein-induced membrane disorder: a molecular dynamics study of melittin in a dipalmitoylphosphatidylcholine bilayer.

Authors:  M Bachar; O M Becker
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

Review 9.  Force Field Development for Lipid Membrane Simulations.

Authors:  Alexander P Lyubartsev; Alexander L Rabinovich
Journal:  Biochim Biophys Acta       Date:  2016-01-04

10.  Exploring peptide membrane interaction using surface plasmon resonance: differentiation between pore formation versus membrane disruption by lytic peptides.

Authors:  Niv Papo; Yechiel Shai
Journal:  Biochemistry       Date:  2003-01-21       Impact factor: 3.162

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  37 in total

1.  Spontaneous and Stress-Induced Pore Formation in Membranes: Theory, Experiments and Simulations.

Authors:  Edel Cunill-Semanat; Jesús Salgado
Journal:  J Membr Biol       Date:  2019-07-30       Impact factor: 1.843

2.  Accelerated antimicrobial discovery via deep generative models and molecular dynamics simulations.

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Journal:  Nat Biomed Eng       Date:  2021-03-11       Impact factor: 25.671

3.  The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels.

Authors:  Fatih Comert; Alexander Greenwood; Joseph Maramba; Roderico Acevedo; Laura Lucas; Thulasi Kulasinghe; Leah S Cairns; Yi Wen; Riqiang Fu; Janet Hammer; Jack Blazyk; Sergei Sukharev; Myriam L Cotten; Mihaela Mihailescu
Journal:  J Biol Chem       Date:  2019-10-16       Impact factor: 5.157

4.  Primary and Secondary Binding of Exenatide to Liposomes.

Authors:  Anja Stulz; Michaela Breitsamer; Gerhard Winter; Heiko Heerklotz
Journal:  Biophys J       Date:  2020-01-03       Impact factor: 4.033

5.  Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization.

Authors:  Mihaela Mihailescu; Mirco Sorci; Jolita Seckute; Vitalii I Silin; Janet Hammer; B Scott Perrin; Jorge I Hernandez; Nedzada Smajic; Akritee Shrestha; Kimberly A Bogardus; Alexander I Greenwood; Riqiang Fu; Jack Blazyk; Richard W Pastor; Linda K Nicholson; Georges Belfort; Myriam L Cotten
Journal:  J Am Chem Soc       Date:  2019-06-13       Impact factor: 15.419

6.  Broad-Spectrum Antiviral Entry Inhibition by Interfacially Active Peptides.

Authors:  Andrew R Hoffmann; Shantanu Guha; Eric Wu; Jenisha Ghimire; Yilin Wang; Jing He; Robert F Garry; William C Wimley
Journal:  J Virol       Date:  2020-11-09       Impact factor: 5.103

7.  Native Mass Spectrometry of Antimicrobial Peptides in Lipid Nanodiscs Elucidates Complex Assembly.

Authors:  Lawrence R Walker; Elaine M Marzluff; Julia A Townsend; William C Resager; Michael T Marty
Journal:  Anal Chem       Date:  2019-06-28       Impact factor: 6.986

8.  Lipid Scrambling Induced by Membrane-Active Substances.

Authors:  Lisa Dietel; Louma Kalie; Heiko Heerklotz
Journal:  Biophys J       Date:  2020-07-14       Impact factor: 4.033

9.  Synthetic molecular evolution of host cell-compatible, antimicrobial peptides effective against drug-resistant, biofilm-forming bacteria.

Authors:  Charles G Starr; Jenisha Ghimire; Shantanu Guha; Joseph P Hoffmann; Yihui Wang; Leisheng Sun; Brooke N Landreneau; Zachary D Kolansky; Isabella M Kilanowski-Doroh; Mimi C Sammarco; Lisa A Morici; William C Wimley
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-02       Impact factor: 11.205

Review 10.  Towards a Quantitative Understanding of Protein-Lipid Bilayer Interactions at the Single Molecule Level: Opportunities and Challenges.

Authors:  Gavin M King; Ioan Kosztin
Journal:  J Membr Biol       Date:  2020-11-16       Impact factor: 1.843

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