Literature DB >> 30617552

Gene expression changes elicited by a parasitic B chromosome in the grasshopper Eyprepocnemis plorans are consistent with its phenotypic effects.

Beatriz Navarro-Domínguez1,2, María Martín-Peciña1, Francisco J Ruiz-Ruano1, Josefa Cabrero1, José María Corral3,4, María Dolores López-León1, Timothy F Sharbel3,5, Juan Pedro M Camacho6.   

Abstract

Parasitism evokes adaptive physiological changes in the host, many of which take place through gene expression changes. This response can be more or less local, depending on the organ or tissue affected by the parasite, or else systemic when the parasite affects the entire host body. The most extreme of the latter cases is intragenomic parasitism, where the parasite is present in all host nuclei as any other genomic element. Here, we show the molecular crosstalk between a parasitic chromosome (also named B chromosome) and the host genome, manifested through gene expression changes. The transcriptome analysis of 0B and 1B females of the grasshopper Eyprepocnemis plorans, validated by a microarray experiment performed on four B-lacking and five B-carrying females, revealed changes in gene expression for 188 unigenes being consistent in both experiments. Once discarded B-derived transcripts, there were 46 differentially expressed genes (30 up- and 16 downregulated) related with the adaptation of the host genome to the presence of the parasitic chromosome. Interestingly, the functions of these genes could explain some of the most important effects of B chromosomes, such as nucleotypic effects derived from the additional DNA they represent, chemical defense and detoxification, protein modification and response to stress, ovary function, and regulation of gene expression. Collectively, these changes uncover an intimate host-parasite interaction between A and B chromosomes during crucial steps of gene expression and protein function.

Entities:  

Keywords:  B chromosome; Gene expression; Microarrays; Transcriptome; qPCR

Mesh:

Year:  2019        PMID: 30617552     DOI: 10.1007/s00412-018-00689-y

Source DB:  PubMed          Journal:  Chromosoma        ISSN: 0009-5915            Impact factor:   4.316


  82 in total

1.  The hnRNP Q-like gene is retroinserted into the B chromosomes of the cichlid fish Astatotilapia latifasciata.

Authors:  Bianca O Carmello; Rafael L B Coan; Adauto L Cardoso; Erica Ramos; Bruno E A Fantinatti; Diego F Marques; Rogério A Oliveira; Guilherme T Valente; Cesar Martins
Journal:  Chromosome Res       Date:  2017-08-03       Impact factor: 5.239

2.  De novo assembly and analysis of RNA-seq data.

Authors:  Gordon Robertson; Jacqueline Schein; Readman Chiu; Richard Corbett; Matthew Field; Shaun D Jackman; Karen Mungall; Sam Lee; Hisanaga Mark Okada; Jenny Q Qian; Malachi Griffith; Anthony Raymond; Nina Thiessen; Timothee Cezard; Yaron S Butterfield; Richard Newsome; Simon K Chan; Rong She; Richard Varhol; Baljit Kamoh; Anna-Liisa Prabhu; Angela Tam; YongJun Zhao; Richard A Moore; Martin Hirst; Marco A Marra; Steven J M Jones; Pamela A Hoodless; Inanc Birol
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

Review 3.  The interleukin-17 cytokine family: critical players in host defence and inflammatory diseases.

Authors:  Rajita Pappu; Vladimir Ramirez-Carrozzi; Arivazhagan Sambandam
Journal:  Immunology       Date:  2011-07-04       Impact factor: 7.397

4.  DNA amount of X and B chromosomes in the grasshoppers Eyprepocnemis plorans and Locusta migratoria.

Authors:  F J Ruiz-Ruano; M Ruiz-Estévez; J Rodríguez-Pérez; J L López-Pino; J Cabrero; J P M Camacho
Journal:  Cytogenet Genome Res       Date:  2011-03-08       Impact factor: 1.636

5.  Population dynamics of a selfish B chromosome neutralized by the standard genome in the grasshopper Eyprepocnemis plorans.

Authors:  J P Camacho; M W Shaw; M D López-León; M C Pardo; J Cabrero
Journal:  Am Nat       Date:  1997-06       Impact factor: 3.926

6.  B chromosomes have a functional effect on female sex determination in Lake Victoria cichlid fishes.

Authors:  Kohta Yoshida; Yohey Terai; Shinji Mizoiri; Mitsuto Aibara; Hidenori Nishihara; Masakatsu Watanabe; Asato Kuroiwa; Hirohisa Hirai; Yuriko Hirai; Yoichi Matsuda; Norihiro Okada
Journal:  PLoS Genet       Date:  2011-08-18       Impact factor: 5.917

7.  D-Titin: a giant protein with dual roles in chromosomes and muscles.

Authors:  C Machado; D J Andrew
Journal:  J Cell Biol       Date:  2000-10-30       Impact factor: 10.539

8.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

9.  CD-HIT: accelerated for clustering the next-generation sequencing data.

Authors:  Limin Fu; Beifang Niu; Zhengwei Zhu; Sitao Wu; Weizhong Li
Journal:  Bioinformatics       Date:  2012-10-11       Impact factor: 6.937

10.  B-chromosome ribosomal DNA is functional in the grasshopper Eyprepocnemis plorans.

Authors:  Mercedes Ruiz-Estévez; Ma Dolores López-León; Josefa Cabrero; Juan Pedro M Camacho
Journal:  PLoS One       Date:  2012-05-03       Impact factor: 3.240

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  8 in total

1.  De novo genome assembly of the cichlid fish Astatotilapia latifasciata reveals a higher level of genomic polymorphism and genes related to B chromosomes.

Authors:  Maryam Jehangir; Syed F Ahmad; Adauto L Cardoso; Erica Ramos; Guilherme T Valente; Cesar Martins
Journal:  Chromosoma       Date:  2019-05-21       Impact factor: 4.316

2.  Novel B-chromosome-specific transcriptionally active sequences are present throughout the maize B chromosome.

Authors:  Zi-Jie Hong; Jun-Xiang Xiao; Shu-Fen Peng; Yao-Pin Lin; Ya-Ming Cheng
Journal:  Mol Genet Genomics       Date:  2019-11-15       Impact factor: 3.291

3.  Satellite DNA content of B chromosomes in the characid fish Characidium gomesi supports their origin from sex chromosomes.

Authors:  Érica A Serrano-Freitas; Duílio M Z A Silva; Francisco J Ruiz-Ruano; Ricardo Utsunomia; Cristian Araya-Jaime; Claudio Oliveira; Juan Pedro M Camacho; Fausto Foresti
Journal:  Mol Genet Genomics       Date:  2019-10-17       Impact factor: 3.291

4.  B chromosomes of multiple species have intense evolutionary dynamics and accumulated genes related to important biological processes.

Authors:  Syed F Ahmad; Maryam Jehangir; Adauto L Cardoso; Ivan R Wolf; Vladimir P Margarido; Diogo C Cabral-de-Mello; Rachel O'Neill; Guilherme T Valente; Cesar Martins
Journal:  BMC Genomics       Date:  2020-09-23       Impact factor: 3.969

Review 5.  A genomic glimpse of B chromosomes in cichlids.

Authors:  Cesar Martins; Maryam Jehangir
Journal:  Genes Genomics       Date:  2021-02-06       Impact factor: 1.839

6.  Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata.

Authors:  Jordana Inácio Nascimento-Oliveira; Bruno Evaristo Almeida Fantinatti; Ivan Rodrigo Wolf; Adauto Lima Cardoso; Erica Ramos; Nathalie Rieder; Rogerio de Oliveira; Cesar Martins
Journal:  BMC Genomics       Date:  2021-05-12       Impact factor: 3.969

Review 7.  Sequence Expression of Supernumerary B Chromosomes: Function or Fluff?

Authors:  Elena Dalla Benetta; Omar S Akbari; Patrick M Ferree
Journal:  Genes (Basel)       Date:  2019-02-08       Impact factor: 4.096

Review 8.  The Modern View of B Chromosomes Under the Impact of High Scale Omics Analyses.

Authors:  Syed Farhan Ahmad; Cesar Martins
Journal:  Cells       Date:  2019-02-13       Impact factor: 6.600

  8 in total

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