| Literature DB >> 30610194 |
Katarina Lisac1, Filip Topić2, Mihails Arhangelskis2, Sara Cepić1, Patrick A Julien2, Christopher W Nickels2, Andrew J Morris3, Tomislav Friščić4, Dominik Cinčić5.
Abstract
The formation of non-covalent directional interactions, suchEntities:
Year: 2019 PMID: 30610194 PMCID: PMC6320372 DOI: 10.1038/s41467-018-07957-6
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
Fig. 1Cocrystals with I···P, I···As, and I···Sb halogen bonds. a Schematic view of the herein explored halogen bond donor tftib and the acceptors NPh, PPh, AsPh, SbPh, and BiPh. Structures of the halogen-bonded molecular assemblies in the cocrystals: b (tftib)(PPh), c (tftib)(AsPh), and d (tftib)(SbPh)
Crystallographic parameters, XB distances, angles, RXB and R for (tftib)(PPh3), (tftib)(AsPh3) and (tftib)(SbPh3), determined at 103 K
| (tftib)(PPh3) | (tftib)(AsPh3) | (tftib)(SbPh3) | |
|---|---|---|---|
| 9.1186(8) | 9.1477(8) | 9.1863(10) | |
| 10.8976(10) | 11.0051(9) | 11.2726(12) | |
| 13.3301(12) | 13.3755(12) | 13.3561(14) | |
| 88.147(3) | 88.515(3) | 89.190(4) | |
| 72.738(3) | 71.685(3) | 70.066(4) | |
| 76.213(3) | 76.816(3) | 78.455(4) | |
| 3.3133(5) | 3.4211(3) | 3.5747(3) | |
|
| 0.877 | 0.893 | 0.885 |
| ∠C−I···E (o) | 165.33(4) | 166.02(5) | 168.28(6) |
| 2.66 | 3.13 | 3.12 |
Note: RXB = d(X···Y)/(rX + rY); d(X···Y) is the distance between X and Y in an R−X···Y halogen bond; rX and rY are the respective vdW radii of X and Y[22,23]
Fig. 2Overview of molecular packing in the cocrystal (tftib)(PPh). a Each of the iodine atoms of the per tftib molecule is involved in a short I···P interaction with a neighboring PPh unit, an I···π contact with another neighboring PPh molecule or a short I···F contact to a neighboring tftib molecule. b Pairs of tftib molecules in the crystal structure stack with phenyl rings of two neighboring PPh moieties. The cocrystal structures of (tftib)(AsPh) and (tftib)(SbPh) are isostructural and corresponding crystal structure views are shown in the Supplementary Fig. 1
Fig. 3Mechanochemical synthesis of the cocrystals. a Comparison of powder X-ray diffraction (PXRD) patterns relevant for the observed mechanochemical cocrystallization reactions of tftib with PPh, AsPh, and SbPh, as well as attempted mechanochemical syntheses of (tftib)(NPh) and (tftib)(BiPh) by neat milling. Results of corresponding LAG experiments are shown in the Supplementary Figs. 3-7. Real-time collected time-resolved Raman spectra for the mechanochemical neat milling reactions of tftib with: b PPh, c AsPh, and d SbPh, demonstrating the rapid formation of the corresponding cocrystals
Calculated cocrystal formation energies (ΔEf,calc), halogen bond energies (EXB,calc), distances (dXB,calc) and ESP minima on the pnictogen atom or the phenyl ring for (tftib)(PPh3), (tftib)(AsPh3), (tftib)(SbPh3), (tftib)(BiPh3)a, and (tftib)(NPh3)b in cocrystal and gas phase
| acceptor | Δ | ESP (pnictogen, kJ mol−1) | ESP (phenyl, kJ mol−1) | ||||
|---|---|---|---|---|---|---|---|
|
| –b | –b | 13.87 | –b | 3.149 | −28.9c | −64.6 |
|
| −15.40 | 16.96 | 22.79 | 3.363 | 3.318 | −118.4 | −62.0 |
|
| −11.38 | 13.12 | 15.66 | 3.529 | 3.514 | −95.8 | −63.5 |
|
| −7.36 | 12.88 | 15.67 | 3.577 | 3.589 | −89.8 | −61.4 |
|
| +1.27 | 5.65 | 7.23 | 3.803 | 3.817 | −6.0 | −66.4 |
aPutative structure for (tftib)(BiPh) cocrystal was generated from that of (tftib)(SbPh) by replacing the Sb atom with Bi and optimization
bDifferent geometry of NPh compared to its congeners prevented generating a structure for the putative (tftib)(NPh) cocrystal
cValue corresponds to the point in the center of the molecule closest to the N atom
Fig. 4Theoretical analysis of halogen-bonded complexes. a Comparison of calculated ESPs for the donor and all acceptors with isosurfaces plotted at 0.002 a.u. b Optimized gas-phase geometries for the halogen-bonded complexes (tftib)(NPh), (tftib)(PPh), (tftib)(AsPh), (tftib)(SbPh), and (tftib)(BiPh). Supplementary Data 10–14 contain geometries for all optimized gas-phase dimers in XYZ format (see Supplementary Note 2)
Melting points (Tm) and the enthalpies of fusion (ΔHfus) for cocrystal components tftib, PPh3, AsPh3 and SbPh3, and the cocrystals (tftib)(PPh3), (tftib)(AsPh3), and (tftib)(SbPh3)
| Δ | ||
|---|---|---|
|
| 152.90 | 16.15 |
|
| 78.79 | 14.49 |
|
| 59.23 | 12.40 |
|
| 52.84 | 13.13 |
| ( | 106.23 | 31.26 |
| ( | 92.10 | 29.84 |
| ( | 77.06 | 21.18 |
Geometrical parameters of C−I···E (E=P, As, Sb) halogen bonds at different temperatures
| Cocrystal | (tftib)(PPh3) @103 K | (tftib)(PPh3) @153 K | (tftib)(PPh3) @203 K | (tftib)(PPh3) @253 K |
|---|---|---|---|---|
| 103.0(1) | 153.0(1) | 203.0(1) | 253.0(1) | |
| 3.3133(5) | 3.3280(5) | 3.3469(6) | 3.3669(8) | |
|
| 0.877 | 0.880 | 0.885 | 0.891 |
| ∠C−I···E (°) | 165.33(4) | 165.34(5) | 165.33(6) | 165.26(8) |
| Cocrystal | ( | ( | ( | ( |
| 103.0(1) | 153.0(1) | 203.0(1) | 253.0(1) | |
| 3.4211(3) | 3.4412(3) | 3.4631(4) | 3.4886(7) | |
|
| 0.893 | 0.898 | 0.904 | 0.911 |
| ∠C−I···E (°) | 166.02(5) | 165.89(6) | 165.81(7) | 165.73(9) |
| Cocrystal | ( | ( | ( | ( |
| 103.0(1) | 153.0(1) | 203.0(1) | 253.0(1) | |
| 3.5747(3) | 3.5873(4) | 3.6125(3) | 3.6307(4) | |
|
| 0.885 | 0.888 | 0.894 | 0.899 |
| ∠C−I···E (°) | 168.28(6) | 168.14(6) | 168.00(8) | 167.79(10) |
Fig. 5Selected thermal properties of the herein presented cocrystals. a Temperature dependence of the principal axes lengths reveals colossal thermal expansion for (tftib)(SbPh). For corresponding data on (tftib)(PPh) and (tftib)(AsPh) see Supplementary Figs. 27-29. b Temperature-dependent change in dXB for (tftib)(PPh) (bottom), (tftib)(AsPh) (middle), and (tftib)(SbPh) (top)