Literature DB >> 30590429

Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Thomas L Madden1, Ben Busby1, Jian Ye1.   

Abstract

Mesh：

Year:  2019        PMID： 30590429      PMCID： PMC6662297          DOI： 10.1093/bioinformatics/bty1026

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


× No keyword cloud information.
  4 in total

Review 1.  Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.

Authors:  A A Schäffer; L Aravind; T L Madden; S Shavirin; J L Spouge; Y I Wolf; E V Koonin; S F Altschul
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

Review 2.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

3.  Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows.

Authors:  Nidhi Shah; Michael G Nute; Tandy Warnow; Mihai Pop
Journal:  Bioinformatics       Date:  2019-05-01       Impact factor: 6.937

4.  BLAST+: architecture and applications.

Authors:  Christiam Camacho; George Coulouris; Vahram Avagyan; Ning Ma; Jason Papadopoulos; Kevin Bealer; Thomas L Madden
Journal:  BMC Bioinformatics       Date:  2009-12-15       Impact factor: 3.169
  4 in total
  5 in total

1.  Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

Authors:  Robert Lücking; M Catherine Aime; Barbara Robbertse; Andrew N Miller; Hiran A Ariyawansa; Takayuki Aoki; Gianluigi Cardinali; Pedro W Crous; Irina S Druzhinina; David M Geiser; David L Hawksworth; Kevin D Hyde; Laszlo Irinyi; Rajesh Jeewon; Peter R Johnston; Paul M Kirk; Elaine Malosso; Tom W May; Wieland Meyer; Maarja Öpik; Vincent Robert; Marc Stadler; Marco Thines; Duong Vu; Andrey M Yurkov; Ning Zhang; Conrad L Schoch
Journal:  IMA Fungus       Date:  2020-07-10       Impact factor: 3.515

2.  Molecular Modeling of ABHD5 Structure and Ligand Recognition.

Authors:  Rezvan Shahoei; Susheel Pangeni; Matthew A Sanders; Huamei Zhang; Ljiljana Mladenovic-Lucas; William R Roush; Geoff Halvorsen; Christopher V Kelly; James G Granneman; Yu-Ming M Huang
Journal:  Front Mol Biosci       Date:  2022-06-28

3.  Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

Authors:  Robert Lücking; M Catherine Aime; Barbara Robbertse; Andrew N Miller; Hiran A Ariyawansa; Takayuki Aoki; Gianluigi Cardinali; Pedro W Crous; Irina S Druzhinina; David M Geiser; David L Hawksworth; Kevin D Hyde; Laszlo Irinyi; Rajesh Jeewon; Peter R Johnston; Paul M Kirk; Elaine Malosso; Tom W May; Wieland Meyer; Maarja Öpik; Vincent Robert; Marc Stadler; Marco Thines; Duong Vu; Andrey M Yurkov; Ning Zhang; Conrad L Schoch
Journal:  IMA Fungus       Date:  2020-07-10       Impact factor: 3.515

4.  Blast2Fish: a reference-based annotation web tool for transcriptome analysis of non-model teleost fish.

Authors:  Chun-Hsi Tso; Jen-Leih Wu; Ming-Wei Lu
Journal:  BMC Bioinformatics       Date:  2020-05-04       Impact factor: 3.169

5.  Murine Model for Measuring Effects of Humanized-Dosing of Antibiotics on the Gut Microbiome.

Authors:  Shana R Leopold; Kamilia Abdelraouf; David P Nicolau; Hanako Agresta; Jethro Johnson; Kathleen Teter; Wm Michael Dunne; David Broadwell; Alex van Belkum; Lisa M Schechter; Erica J Sodergren; George M Weinstock
Journal:  Front Microbiol       Date:  2022-02-17       Impact factor: 5.640
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.