Literature DB >> 30247621

Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows.

Nidhi Shah1, Michael G Nute2, Tandy Warnow3, Mihai Pop1.   

Abstract

Mesh：

Year:  2019        PMID： 30247621     DOI： 10.1093/bioinformatics/bty833

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  19 in total

1.  Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples.

Authors:  Lucas Czech; Alexandros Stamatakis
Journal:  PLoS One       Date:  2019-05-28       Impact factor: 3.240

2.  Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows.

Authors:  Thomas L Madden; Ben Busby; Jian Ye
Journal:  Bioinformatics       Date:  2019-08-01       Impact factor: 6.937

3.  The behavioral origins of novelty: did increased aggression lead to scale-eating in pupfishes?

Authors:  Michelle E St John; Joseph A McGirr; Christopher H Martin
Journal:  Behav Ecol       Date:  2019-01-14       Impact factor: 2.671

4.  De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.

Authors:  Martin Hölzer; Manja Marz
Journal:  Gigascience       Date:  2019-05-01       Impact factor: 6.524

5.  Use of the ISU FLUture multisequence identity tool for rapid interpretation of swine influenza A virus sequences in the United States.

Authors:  Michael A Zeller; Anugrah Saxena; Tavis K Anderson; Amy L Vincent; Phillip C Gauger
Journal:  J Vet Diagn Invest       Date:  2022-07-25       Impact factor: 1.569

Review 6.  Viruses of Polar Aquatic Environments.

Authors:  Sheree Yau; Mansha Seth-Pasricha
Journal:  Viruses       Date:  2019-02-22       Impact factor: 5.048

7.  Benchmarking comes of age.

Authors:  Mark D Robinson; Olga Vitek
Journal:  Genome Biol       Date:  2019-10-09       Impact factor: 13.583

8.  Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known.

Authors:  Mikhail I Schelkunov; Maxim S Nuraliev; Maria D Logacheva
Journal:  PeerJ       Date:  2019-09-12       Impact factor: 2.984

9.  Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation.

Authors:  Oskar N Johansson; Mats Töpel; Jenny Egardt; Matthew I M Pinder; Mats X Andersson; Anna Godhe; Adrian K Clarke
Journal:  Sci Rep       Date:  2019-10-22       Impact factor: 4.379

10.  Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus.

Authors:  Taane G Clark; Susana Campino; Anton Spadar; Jody E Phelan; Ernest Diez Benavente; Monica Campos; Lara Ferrero Gomez; Fady Mohareb
Journal:  Parasit Vectors       Date:  2021-06-26       Impact factor: 4.047
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