Literature DB >> 30578414

Genomic evolution of cancer models: perils and opportunities.

Uri Ben-David1, Rameen Beroukhim2,3,4,5, Todd R Golub6,7,8,9.   

Abstract

Cancer research relies on model systems, which reflect the biology of actual human tumours to only a certain extent. One important feature of human cancer is its intra-tumour genomic heterogeneity and instability. However, the extent of such genomic instability in cancer models has received limited attention in research. Here, we review the state of knowledge of genomic instability of cancer models and discuss its biological origins and implications for basic research and for cancer precision medicine. We discuss strategies to cope with such genomic evolution and evaluate both the perils and the emerging opportunities associated with it.

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Year:  2019        PMID: 30578414      PMCID: PMC6493335          DOI: 10.1038/s41568-018-0095-3

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  127 in total

Review 1.  Short- and long-term effects of chromosome mis-segregation and aneuploidy.

Authors:  Stefano Santaguida; Angelika Amon
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08       Impact factor: 94.444

2.  Inconsistency in large pharmacogenomic studies.

Authors:  Benjamin Haibe-Kains; Nehme El-Hachem; Nicolai Juul Birkbak; Andrew C Jin; Andrew H Beck; Hugo J W L Aerts; John Quackenbush
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

3.  Patient-derived xenografts recapitulate molecular features of human uveal melanomas.

Authors:  Cécile Laurent; David Gentien; Sophie Piperno-Neumann; Fariba Némati; André Nicolas; Bruno Tesson; Laurence Desjardins; Pascale Mariani; Audrey Rapinat; Xavier Sastre-Garau; Jérôme Couturier; Philippe Hupé; Leanne de Koning; Thierry Dubois; Sergio Roman-Roman; Marc-Henri Stern; Emmanuel Barillot; J William Harbour; Simon Saule; Didier Decaudin
Journal:  Mol Oncol       Date:  2013-02-26       Impact factor: 6.603

4.  Glioblastoma-derived stem cell-enriched cultures form distinct subgroups according to molecular and phenotypic criteria.

Authors:  H S Günther; N O Schmidt; H S Phillips; D Kemming; S Kharbanda; R Soriano; Z Modrusan; H Meissner; M Westphal; K Lamszus
Journal:  Oncogene       Date:  2007-11-26       Impact factor: 9.867

5.  A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models.

Authors:  Xiaomei Zhang; Sofie Claerhout; Aleix Prat; Lacey E Dobrolecki; Ivana Petrovic; Qing Lai; Melissa D Landis; Lisa Wiechmann; Rachel Schiff; Mario Giuliano; Helen Wong; Suzanne W Fuqua; Alejandro Contreras; Carolina Gutierrez; Jian Huang; Sufeng Mao; Anne C Pavlick; Amber M Froehlich; Meng-Fen Wu; Anna Tsimelzon; Susan G Hilsenbeck; Edward S Chen; Pavel Zuloaga; Chad A Shaw; Mothaffar F Rimawi; Charles M Perou; Gordon B Mills; Jenny C Chang; Michael T Lewis
Journal:  Cancer Res       Date:  2013-06-04       Impact factor: 12.701

6.  Organoid cultures derived from patients with advanced prostate cancer.

Authors:  Dong Gao; Ian Vela; Andrea Sboner; Phillip J Iaquinta; Wouter R Karthaus; Anuradha Gopalan; Catherine Dowling; Jackline N Wanjala; Eva A Undvall; Vivek K Arora; John Wongvipat; Myriam Kossai; Sinan Ramazanoglu; Luendreo P Barboza; Wei Di; Zhen Cao; Qi Fan Zhang; Inna Sirota; Leili Ran; Theresa Y MacDonald; Himisha Beltran; Juan-Miguel Mosquera; Karim A Touijer; Peter T Scardino; Vincent P Laudone; Kristen R Curtis; Dana E Rathkopf; Michael J Morris; Daniel C Danila; Susan F Slovin; Stephen B Solomon; James A Eastham; Ping Chi; Brett Carver; Mark A Rubin; Howard I Scher; Hans Clevers; Charles L Sawyers; Yu Chen
Journal:  Cell       Date:  2014-09-04       Impact factor: 41.582

7.  Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.

Authors:  Eran R Andrechek; Robert D Cardiff; Jeffrey T Chang; Michael L Gatza; Chaitanya R Acharya; Anil Potti; Joseph R Nevins
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-04       Impact factor: 11.205

8.  Patient-derived xenografts effectively capture responses to oncology therapy in a heterogeneous cohort of patients with solid tumors.

Authors:  E Izumchenko; K Paz; D Ciznadija; I Sloma; A Katz; D Vasquez-Dunddel; I Ben-Zvi; J Stebbing; W McGuire; W Harris; R Maki; A Gaya; A Bedi; S Zacharoulis; R Ravi; L H Wexler; M O Hoque; C Rodriguez-Galindo; H Pass; N Peled; A Davies; R Morris; M Hidalgo; D Sidransky
Journal:  Ann Oncol       Date:  2017-10-01       Impact factor: 32.976

9.  Non-cell-autonomous driving of tumour growth supports sub-clonal heterogeneity.

Authors:  Andriy Marusyk; Doris P Tabassum; Philipp M Altrock; Vanessa Almendro; Franziska Michor; Kornelia Polyak
Journal:  Nature       Date:  2014-07-30       Impact factor: 49.962

10.  Patient-derived xenografts undergo mouse-specific tumor evolution.

Authors:  Uri Ben-David; Gavin Ha; Yuen-Yi Tseng; Noah F Greenwald; Coyin Oh; Juliann Shih; James M McFarland; Bang Wong; Jesse S Boehm; Rameen Beroukhim; Todd R Golub
Journal:  Nat Genet       Date:  2017-10-09       Impact factor: 38.330

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  60 in total

Review 1.  Zebrafish patient avatars in cancer biology and precision cancer therapy.

Authors:  Maurizio Fazio; Julien Ablain; Yan Chuan; David M Langenau; Leonard I Zon
Journal:  Nat Rev Cancer       Date:  2020-04-06       Impact factor: 60.716

Review 2.  Modeling Leukemia with Human Induced Pluripotent Stem Cells.

Authors:  Eirini P Papapetrou
Journal:  Cold Spring Harb Perspect Med       Date:  2019-12-02       Impact factor: 6.915

Review 3.  Patient-derived tumour models for personalized therapeutics in urological cancers.

Authors:  Arjanneke F van de Merbel; Geertje van der Horst; Gabri van der Pluijm
Journal:  Nat Rev Urol       Date:  2020-11-10       Impact factor: 14.432

Review 4.  Potential impact of tissue molecular heterogeneity on ambient mass spectrometry profiles: a note of caution in choosing the right disease model.

Authors:  Lauren Katz; Michael Woolman; Alessandra Tata; Arash Zarrine-Afsar
Journal:  Anal Bioanal Chem       Date:  2020-11-27       Impact factor: 4.142

Review 5.  Recent advances in understanding the roles of sialyltransferases in tumor angiogenesis and metastasis.

Authors:  Chunyan Xu; Shidan Wang; Yinshuang Wu; Xiaoxin Sun; Deyong Yang; Shujing Wang
Journal:  Glycoconj J       Date:  2021-01-07       Impact factor: 2.916

6.  RGB-Marking to Identify Patterns of Selection and Neutral Evolution in Human Osteosarcoma Models.

Authors:  Stefano Gambera; Ana Patiño-Garcia; Arantzazu Alfranca; Javier Garcia-Castro
Journal:  Cancers (Basel)       Date:  2021-04-21       Impact factor: 6.639

7.  A first-generation pediatric cancer dependency map.

Authors:  Neekesh V Dharia; Guillaume Kugener; Lillian M Guenther; Clare F Malone; Adam D Durbin; Andrew L Hong; Thomas P Howard; Pratiti Bandopadhayay; Caroline S Wechsler; Iris Fung; Allison C Warren; Joshua M Dempster; John M Krill-Burger; Brenton R Paolella; Phoebe Moh; Nishant Jha; Andrew Tang; Philip Montgomery; Jesse S Boehm; William C Hahn; Charles W M Roberts; James M McFarland; Aviad Tsherniak; Todd R Golub; Francisca Vazquez; Kimberly Stegmaier
Journal:  Nat Genet       Date:  2021-03-22       Impact factor: 38.330

8.  Increased Tumor Growth Rate and Mesenchymal Properties of NSCLC-Patient-Derived Xenograft Models during Serial Transplantation.

Authors:  José Miguel Pardo-Sánchez; Nuria Mancheño; José Cerón; Carlos Jordá; Emilio Ansotegui; Óscar Juan; Sarai Palanca; Antonio Cremades; Carolina Gandía; Rosa Farràs
Journal:  Cancers (Basel)       Date:  2021-06-14       Impact factor: 6.639

Review 9.  Engineered models of tumor metastasis with immune cell contributions.

Authors:  Pamela L Graney; Daniel Naveed Tavakol; Alan Chramiec; Kacey Ronaldson-Bouchard; Gordana Vunjak-Novakovic
Journal:  iScience       Date:  2021-02-12

10.  TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository.

Authors:  Yingdong Zhao; Ming-Chung Li; Mariam M Konaté; Li Chen; Biswajit Das; Chris Karlovich; P Mickey Williams; Yvonne A Evrard; James H Doroshow; Lisa M McShane
Journal:  J Transl Med       Date:  2021-06-22       Impact factor: 5.531

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