Literature DB >> 30576039

A Topologically Distinct Modified Peptide with Multiple Bicyclic Core Motifs Expands the Diversity of Microviridin-Like Peptides.

Heejin Roh1, Yeji Han1, Hyunbin Lee1, Seokhee Kim1.   

Abstract

Microviridins are ribosomally synthesized and post-translationally modified peptides (RiPPs) that contain multiple intramolecular ω-ester or ω-amide crosslinks between two side chains in peptides. This type of the side-to-side macrocyclization may generate diverse structures with distinct topology and ring sizes, but the majority of the microviridin-like RiPPs present only a single consensus sequence with a tricyclic architecture. Here, we expanded the natural diversity of the microviridin-like modified peptides by determining the crosslinking connectivity of a new modified peptide, mTgnA and its homologous RiPPs, which we named the thuringinin group. Members of the thuringinin group have core motifs with a distinct consensus sequence, which is transformed to a novel hairpin-like bicyclic structure by the cognate ATP-grasp enzyme. We suggest that the microviridin-like RiPPs naturally have novel sequences and architectures beyond those found in microviridins and comprise a larger RiPP family, termed omega-ester containing peptides (OEPs).
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  ATP-grasp; RiPPs; macrocycles; microviridin; peptides

Mesh:

Substances:

Year:  2019        PMID: 30576039     DOI: 10.1002/cbic.201800678

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  9 in total

1.  Microviridin 1777: A Toxic Chymotrypsin Inhibitor Discovered by a Metabologenomic Approach.

Authors:  Simon Sieber; Simone M Grendelmeier; Lonnie A Harris; Douglas A Mitchell; Karl Gademann
Journal:  J Nat Prod       Date:  2020-01-28       Impact factor: 4.050

Review 2.  Recent advances in the biosynthesis of RiPPs from multicore-containing precursor peptides.

Authors:  Garret M Rubin; Yousong Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-02       Impact factor: 3.346

3.  Bioinformatics-Guided Expansion and Discovery of Graspetides.

Authors:  Sangeetha Ramesh; Xiaorui Guo; Adam J DiCaprio; Ashley M De Lio; Lonnie A Harris; Bryce L Kille; Taras V Pogorelov; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2021-11-12       Impact factor: 5.100

4.  Heterologous expression of a cryptic gene cluster from Marinomonas fungiae affords a novel tricyclic peptide marinomonasin.

Authors:  Issara Kaweewan; Hiroyuki Nakagawa; Shinya Kodani
Journal:  Appl Microbiol Biotechnol       Date:  2021-09-04       Impact factor: 4.813

5.  Biosynthesis and characterization of fuscimiditide, an aspartimidylated graspetide.

Authors:  Hader E Elashal; Joseph D Koos; Wai Ling Cheung-Lee; Brian Choi; Li Cao; Michelle A Richardson; Heather L White; A James Link
Journal:  Nat Chem       Date:  2022-08-18       Impact factor: 24.274

6.  Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product.

Authors:  Gengxiang Zhao; Dalibor Kosek; Hong-Bing Liu; Shannon I Ohlemacher; Brittney Blackburne; Anastasia Nikolskaya; Kira S Makarova; Jiadong Sun; Clifton E Barry Iii; Eugene V Koonin; Fred Dyda; Carole A Bewley
Journal:  J Am Chem Soc       Date:  2021-05-24       Impact factor: 16.383

Review 7.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

8.  Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis.

Authors:  Kira S Makarova; Brittney Blackburne; Yuri I Wolf; Anastasia Nikolskaya; Svetlana Karamycheva; Marlene Espinoza; Clifton E Barry; Carole A Bewley; Eugene V Koonin
Journal:  Biol Direct       Date:  2022-03-21       Impact factor: 4.540

9.  Functional expression of diverse post-translational peptide-modifying enzymes in Escherichia coli under uniform expression and purification conditions.

Authors:  Emerson Glassey; Andrew M King; Daniel A Anderson; Zhengan Zhang; Christopher A Voigt
Journal:  PLoS One       Date:  2022-09-19       Impact factor: 3.752

  9 in total

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