| Literature DB >> 30574385 |
Asmaa Saber1, Nada Kheira Sebbar2, Tuncer Hökelek3, Mohamed El Hafi1, Joel T Mague4, El Mokhtar Essassi1.
Abstract
The title compound, C17H14N2O, is built up from the planar benzo-diazole unit linked to the benzyl and propynyl substituents. The substituents are rotated significantly out of the benzo-diazole plane, where the benzyl group is inclined by 68.91 (7)° to the benzo-diazole unit. In the crystal, the mol-ecules are linked via inter-molecular C-HBnzdzl⋯O and C-HBnzy⋯O (Bnzdzl = benzo-diazole and Bnzy = benz-yl) hydrogen bonds, enclosing R 4 4(27) ring motifs, into a network consisting of rectangular layers parallel to the bc plane which are also stacked along the a-axis direction being associated through C-H⋯π (ring) inter-actions. The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (43.6%), H⋯C/C⋯H (42.0%) and H⋯O/O⋯H (8.9%) inter-actions.Entities:
Keywords: Hirshfeld surface; alkyne; benzodiazole; crystal structure; hydrogen bond
Year: 2018 PMID: 30574385 PMCID: PMC6281085 DOI: 10.1107/S2056989018016298
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C6 benzene ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3⋯O1iii | 0.982 (18) | 2.542 (18) | 3.4997 (18) | 165.1 (14) |
| C16—H16⋯O1vi | 0.994 (18) | 2.568 (18) | 3.468 (2) | 150.6 (14) |
| C17—H17⋯ | 1.00 (2) | 2.831 (18) | 3.6964 (17) | 144.6 (15) |
Symmetry codes: (iii) ; (vi) ; (viii) .
Figure 2Plan view of a portion of one layer seen along the a-axis direction. Intermolecular C—HBnzdzl⋯O and C—HBnzy⋯O (Bnzdzl = benzodiazole and Bnzy = benzyl) hydrogen bonds are shown by dashed lines.
Figure 3Elevation view of two layers seen along the b-axis direction. C—H⋯O hydrogen bonds are shown by black dashed lines while C—H⋯π(ring) interactions are shown by green dashed lines.
Figure 4View of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.1150 to 1.2702 a.u.
Figure 5View of the three-dimensional Hirshfeld surface of the title compound plotted over electrostatic potential energy in the range −0.0500 to 0.0500 a.u. using the STO-3 G basis set at the Hartree–Fock level of theory hydrogen-bond donors and acceptors are shown as blue and red regions around the atoms corresponding to positive and negative potentials, respectively.
Figure 6Hirshfeld surface of the title compound plotted over shape-index.
Figure 7The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and those delineated into (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯O/O⋯H, (e) H⋯N/N⋯H, (f) C⋯C and (g) N⋯C/C⋯N interactions. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface contacts.
Selected interatomic distances (Å)
| O1⋯H8 | 2.492 (18) | C5⋯H11 | 2.897 (16) |
| O1⋯H11 | 2.607 (16) | C5⋯H10vi | 2.93 (3) |
| O1⋯H13 | 2.760 (18) | C8⋯H2 | 2.947 (16) |
| O1⋯H16i | 2.568 (18) | C10⋯H8 | 2.874 (18) |
| C2⋯C9 | 3.5265 (19) | C10⋯H14iii | 2.95 (2) |
| C7⋯C13 | 3.5805 (19) | C10⋯H11 | 2.895 (17) |
| C9⋯C1ii | 3.5236 (18) | C11⋯H5 | 2.998 (16) |
| C10⋯N2ii | 3.4291 (19) | C13⋯H14v | 2.964 (17) |
| C10⋯C8ii | 3.385 (2) | H3⋯O1iii | 2.542 (18) |
| C10⋯C14iii | 3.512 (3) | H5⋯H11 | 2.46 (2) |
| C11⋯C13iv | 3.495 (2) | H11 | 2.38 (2) |
| C14⋯C14v | 3.543 (2) | H11 | 2.45 (2) |
| C4⋯H10vi | 2.84 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .
Experimental details
| Crystal data | |
| Chemical formula | C17H14N2O |
|
| 262.30 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 298 |
|
| 8.3567 (2), 9.2040 (2), 17.7868 (4) |
| β (°) | 94.559 (1) |
|
| 1363.74 (5) |
|
| 4 |
| Radiation type | Cu |
| μ (mm−1) | 0.64 |
| Crystal size (mm) | 0.23 × 0.20 × 0.19 |
| Data collection | |
| Diffractometer | Bruker D8 VENTURE PHOTON 100 CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.86, 0.89 |
| No. of measured, independent and observed [ | 13551, 2778, 2433 |
|
| 0.032 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.038, 0.108, 1.05 |
| No. of reflections | 2778 |
| No. of parameters | 238 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.15, −0.12 |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/1 (Sheldrick, 2015b ▸), Mercury (Macrae, et al., 2008 ▸) and SHELXTL (Sheldrick, 2008 ▸).
Figure 8The Hirshfeld surface representations with the function d norm plotted onto the surface for (a) H⋯H, (b) H⋯C/C⋯H, (c) H⋯O/O⋯H and (d) H⋯O/O⋯H interactions.
| C17H14N2O | |
| Monoclinic, | Cu |
| Cell parameters from 9908 reflections | |
| θ = 2.5–74.9° | |
| µ = 0.64 mm−1 | |
| β = 94.559 (1)° | |
| Block, colourless | |
| 0.23 × 0.20 × 0.19 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 2433 reflections with |
| Radiation source: INCOATEC IµS micro-focus source | |
| ω scans | θmax = 74.4°, θmin = 5.0° |
| Absorption correction: multi-scan ( | |
| 13551 measured reflections | |
| 2778 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: difference Fourier map |
| All H-atom parameters refined | |
| (Δ/σ)max < 0.001 | |
| 2778 reflections | Δρmax = 0.15 e Å−3 |
| 238 parameters | Δρmin = −0.12 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0123 (10) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.22681 (15) | 0.83445 (11) | 0.40629 (6) | 0.0792 (3) | |
| N1 | 0.34376 (12) | 0.66295 (10) | 0.33147 (5) | 0.0533 (3) | |
| N2 | 0.17477 (12) | 0.82074 (10) | 0.27629 (6) | 0.0543 (3) | |
| C1 | 0.22401 (13) | 0.73060 (12) | 0.22001 (6) | 0.0491 (3) | |
| C2 | 0.18494 (17) | 0.72757 (15) | 0.14354 (7) | 0.0629 (3) | |
| H2 | 0.1121 (19) | 0.7990 (18) | 0.1214 (9) | 0.075 (4)* | |
| C3 | 0.2547 (2) | 0.62075 (18) | 0.10228 (8) | 0.0734 (4) | |
| H3 | 0.234 (2) | 0.617 (2) | 0.0472 (10) | 0.090 (5)* | |
| C4 | 0.3609 (2) | 0.52123 (16) | 0.13680 (8) | 0.0703 (4) | |
| H4 | 0.414 (2) | 0.4500 (18) | 0.1060 (9) | 0.077 (4)* | |
| C5 | 0.40140 (16) | 0.52408 (14) | 0.21399 (8) | 0.0590 (3) | |
| H5 | 0.476 (2) | 0.4532 (18) | 0.2392 (9) | 0.077 (4)* | |
| C6 | 0.33092 (13) | 0.63007 (12) | 0.25513 (6) | 0.0478 (3) | |
| C7 | 0.24590 (16) | 0.77932 (13) | 0.34550 (7) | 0.0555 (3) | |
| C8 | 0.06278 (18) | 0.94116 (15) | 0.26623 (10) | 0.0675 (4) | |
| H8A | −0.034 (2) | 0.908 (2) | 0.2331 (11) | 0.095 (6)* | |
| H8B | 0.030 (2) | 0.965 (2) | 0.3179 (11) | 0.089 (5)* | |
| C9 | 0.13423 (17) | 1.06640 (14) | 0.23111 (8) | 0.0633 (3) | |
| C10 | 0.1922 (2) | 1.16568 (17) | 0.20289 (11) | 0.0854 (5) | |
| H10 | 0.236 (3) | 1.249 (3) | 0.1798 (13) | 0.132 (8)* | |
| C11 | 0.43747 (17) | 0.58361 (15) | 0.39115 (8) | 0.0600 (3) | |
| H11A | 0.539 (2) | 0.5429 (18) | 0.3684 (9) | 0.080 (5)* | |
| H11B | 0.4649 (19) | 0.6538 (18) | 0.4327 (10) | 0.080 (5)* | |
| C12 | 0.34639 (14) | 0.45907 (12) | 0.42256 (6) | 0.0512 (3) | |
| C13 | 0.23968 (18) | 0.48403 (17) | 0.47628 (8) | 0.0675 (4) | |
| H13 | 0.223 (2) | 0.587 (2) | 0.4938 (9) | 0.087 (5)* | |
| C14 | 0.1570 (2) | 0.3702 (2) | 0.50568 (10) | 0.0819 (5) | |
| H14 | 0.086 (2) | 0.387 (2) | 0.5429 (12) | 0.107 (6)* | |
| C15 | 0.1808 (2) | 0.2308 (2) | 0.48218 (11) | 0.0830 (5) | |
| H15 | 0.123 (2) | 0.154 (2) | 0.5025 (10) | 0.095 (6)* | |
| C16 | 0.2874 (3) | 0.20500 (18) | 0.42939 (11) | 0.0870 (5) | |
| H16 | 0.306 (2) | 0.104 (2) | 0.4124 (11) | 0.106 (6)* | |
| C17 | 0.3696 (2) | 0.31841 (15) | 0.39958 (9) | 0.0701 (4) | |
| H17 | 0.446 (2) | 0.299 (2) | 0.3599 (12) | 0.103 (6)* |
| O1 | 0.1247 (9) | 0.0571 (6) | 0.0569 (5) | 0.0079 (5) | 0.0134 (5) | −0.0057 (4) |
| N1 | 0.0663 (6) | 0.0445 (5) | 0.0475 (5) | 0.0034 (4) | −0.0042 (4) | 0.0037 (4) |
| N2 | 0.0612 (6) | 0.0435 (5) | 0.0583 (6) | 0.0059 (4) | 0.0049 (4) | 0.0066 (4) |
| C1 | 0.0519 (6) | 0.0436 (6) | 0.0512 (6) | −0.0061 (4) | 0.0006 (4) | 0.0055 (4) |
| C2 | 0.0717 (8) | 0.0593 (7) | 0.0557 (7) | −0.0085 (6) | −0.0081 (6) | 0.0106 (6) |
| C3 | 0.1009 (11) | 0.0707 (9) | 0.0478 (7) | −0.0184 (8) | 0.0008 (7) | 0.0001 (6) |
| C4 | 0.0940 (10) | 0.0571 (8) | 0.0619 (8) | −0.0090 (7) | 0.0197 (7) | −0.0083 (6) |
| C5 | 0.0661 (7) | 0.0469 (6) | 0.0645 (7) | 0.0002 (5) | 0.0090 (6) | 0.0013 (5) |
| C6 | 0.0524 (6) | 0.0413 (5) | 0.0493 (6) | −0.0050 (4) | 0.0014 (4) | 0.0035 (4) |
| C7 | 0.0727 (8) | 0.0420 (6) | 0.0520 (6) | −0.0020 (5) | 0.0054 (5) | 0.0027 (5) |
| C8 | 0.0649 (8) | 0.0524 (7) | 0.0868 (10) | 0.0123 (6) | 0.0158 (7) | 0.0174 (7) |
| C9 | 0.0715 (8) | 0.0472 (6) | 0.0723 (8) | 0.0125 (6) | 0.0130 (6) | 0.0067 (6) |
| C10 | 0.1019 (12) | 0.0519 (8) | 0.1070 (13) | 0.0087 (8) | 0.0373 (10) | 0.0107 (8) |
| C11 | 0.0641 (7) | 0.0574 (7) | 0.0560 (7) | −0.0024 (6) | −0.0113 (6) | 0.0091 (6) |
| C12 | 0.0549 (6) | 0.0490 (6) | 0.0478 (6) | 0.0059 (5) | −0.0082 (5) | 0.0057 (5) |
| C13 | 0.0748 (8) | 0.0627 (8) | 0.0652 (8) | 0.0149 (7) | 0.0066 (6) | 0.0057 (6) |
| C14 | 0.0666 (8) | 0.0971 (12) | 0.0833 (10) | 0.0159 (8) | 0.0131 (8) | 0.0295 (9) |
| C15 | 0.0703 (9) | 0.0791 (11) | 0.0967 (12) | −0.0107 (8) | −0.0120 (8) | 0.0368 (9) |
| C16 | 0.1131 (14) | 0.0506 (8) | 0.0956 (12) | −0.0019 (8) | −0.0018 (10) | 0.0065 (8) |
| C17 | 0.0896 (10) | 0.0526 (7) | 0.0687 (8) | 0.0097 (7) | 0.0099 (7) | 0.0036 (6) |
| O1—C7 | 1.2163 (15) | C8—H8A | 1.01 (2) |
| N1—C7 | 1.3823 (16) | C8—H8B | 1.004 (18) |
| N1—C6 | 1.3869 (15) | C9—C10 | 1.166 (2) |
| N1—C11 | 1.4632 (15) | C10—H10 | 0.95 (2) |
| N2—C7 | 1.3775 (16) | C11—C12 | 1.5076 (17) |
| N2—C1 | 1.3875 (15) | C11—H11A | 1.042 (17) |
| N2—C8 | 1.4525 (16) | C11—H11B | 0.995 (18) |
| C1—C2 | 1.3737 (17) | C12—C17 | 1.3761 (18) |
| C1—C6 | 1.3985 (16) | C12—C13 | 1.3771 (19) |
| C2—C3 | 1.383 (2) | C13—C14 | 1.381 (2) |
| C2—H2 | 0.959 (17) | C13—H13 | 1.008 (19) |
| C3—C4 | 1.384 (2) | C14—C15 | 1.369 (3) |
| C3—H3 | 0.982 (18) | C14—H14 | 0.94 (2) |
| C4—C5 | 1.388 (2) | C15—C16 | 1.366 (3) |
| C4—H4 | 0.983 (17) | C15—H15 | 0.94 (2) |
| C5—C6 | 1.3793 (17) | C16—C17 | 1.379 (2) |
| C5—H5 | 0.986 (17) | C16—H16 | 0.99 (2) |
| C8—C9 | 1.4610 (19) | C17—H17 | 1.00 (2) |
| O1···H8B | 2.492 (18) | C5···H11A | 2.897 (16) |
| O1···H11B | 2.607 (16) | C5···H10vi | 2.93 (3) |
| O1···H13 | 2.760 (18) | C8···H2 | 2.947 (16) |
| O1···H16i | 2.568 (18) | C10···H8Aii | 2.874 (18) |
| C2···C9 | 3.5265 (19) | C10···H14iii | 2.95 (2) |
| C7···C13 | 3.5805 (19) | C10···H11Avii | 2.895 (17) |
| C9···C1ii | 3.5236 (18) | C11···H5 | 2.998 (16) |
| C10···N2ii | 3.4291 (19) | C13···H14v | 2.964 (17) |
| C10···C8ii | 3.385 (2) | H3···O1iii | 2.542 (18) |
| C10···C14iii | 3.512 (3) | H5···H11A | 2.46 (2) |
| C11···C13iv | 3.495 (2) | H11A···H17 | 2.38 (2) |
| C14···C14v | 3.543 (2) | H11B···H13 | 2.45 (2) |
| C4···H10vi | 2.84 (3) | ||
| C7—N1—C6 | 110.18 (9) | N2—C8—H8B | 105.8 (10) |
| C7—N1—C11 | 123.09 (10) | C9—C8—H8B | 111.9 (11) |
| C6—N1—C11 | 126.62 (10) | H8A—C8—H8B | 109.7 (15) |
| C7—N2—C1 | 110.34 (9) | C10—C9—C8 | 179.48 (16) |
| C7—N2—C8 | 123.32 (11) | C9—C10—H10 | 178.1 (14) |
| C1—N2—C8 | 126.34 (11) | N1—C11—C12 | 113.05 (10) |
| C2—C1—N2 | 131.74 (11) | N1—C11—H11A | 107.8 (9) |
| C2—C1—C6 | 121.46 (11) | C12—C11—H11A | 108.8 (9) |
| N2—C1—C6 | 106.80 (10) | N1—C11—H11B | 107.1 (10) |
| C1—C2—C3 | 117.56 (13) | C12—C11—H11B | 108.2 (9) |
| C1—C2—H2 | 119.0 (10) | H11A—C11—H11B | 112.0 (13) |
| C3—C2—H2 | 123.4 (10) | C17—C12—C13 | 118.52 (13) |
| C2—C3—C4 | 121.16 (13) | C17—C12—C11 | 121.19 (12) |
| C2—C3—H3 | 120.6 (11) | C13—C12—C11 | 120.28 (12) |
| C4—C3—H3 | 118.2 (11) | C12—C13—C14 | 120.50 (15) |
| C3—C4—C5 | 121.56 (14) | C12—C13—H13 | 119.1 (10) |
| C3—C4—H4 | 119.7 (10) | C14—C13—H13 | 120.4 (10) |
| C5—C4—H4 | 118.6 (10) | C15—C14—C13 | 120.41 (16) |
| C6—C5—C4 | 117.22 (13) | C15—C14—H14 | 119.1 (14) |
| C6—C5—H5 | 120.5 (10) | C13—C14—H14 | 120.5 (14) |
| C4—C5—H5 | 122.3 (10) | C16—C15—C14 | 119.46 (16) |
| C5—C6—N1 | 132.12 (11) | C16—C15—H15 | 120.9 (11) |
| C5—C6—C1 | 121.03 (11) | C14—C15—H15 | 119.6 (11) |
| N1—C6—C1 | 106.85 (10) | C15—C16—C17 | 120.33 (16) |
| O1—C7—N2 | 126.95 (12) | C15—C16—H16 | 119.8 (12) |
| O1—C7—N1 | 127.23 (12) | C17—C16—H16 | 119.8 (12) |
| N2—C7—N1 | 105.82 (10) | C12—C17—C16 | 120.78 (15) |
| N2—C8—C9 | 111.93 (11) | C12—C17—H17 | 119.1 (11) |
| N2—C8—H8A | 108.6 (11) | C16—C17—H17 | 120.1 (11) |
| C9—C8—H8A | 108.8 (11) | ||
| C7—N2—C1—C2 | 179.03 (13) | C1—N2—C7—N1 | 1.23 (13) |
| C8—N2—C1—C2 | −0.1 (2) | C8—N2—C7—N1 | −179.61 (11) |
| C7—N2—C1—C6 | −0.58 (13) | C6—N1—C7—O1 | 178.85 (13) |
| C8—N2—C1—C6 | −179.71 (11) | C11—N1—C7—O1 | 2.4 (2) |
| N2—C1—C2—C3 | −179.26 (12) | C6—N1—C7—N2 | −1.44 (13) |
| C6—C1—C2—C3 | 0.29 (18) | C11—N1—C7—N2 | −177.93 (11) |
| C1—C2—C3—C4 | −0.4 (2) | C7—N2—C8—C9 | 107.51 (15) |
| C2—C3—C4—C5 | 0.2 (2) | C1—N2—C8—C9 | −73.46 (18) |
| C3—C4—C5—C6 | 0.2 (2) | C7—N1—C11—C12 | 88.90 (15) |
| C4—C5—C6—N1 | 179.75 (12) | C6—N1—C11—C12 | −87.00 (15) |
| C4—C5—C6—C1 | −0.37 (18) | N1—C11—C12—C17 | 99.61 (15) |
| C7—N1—C6—C5 | −179.00 (12) | N1—C11—C12—C13 | −81.60 (15) |
| C11—N1—C6—C5 | −2.7 (2) | C17—C12—C13—C14 | −0.6 (2) |
| C7—N1—C6—C1 | 1.11 (13) | C11—C12—C13—C14 | −179.46 (13) |
| C11—N1—C6—C1 | 177.44 (11) | C12—C13—C14—C15 | 0.4 (2) |
| C2—C1—C6—C5 | 0.12 (17) | C13—C14—C15—C16 | 0.1 (3) |
| N2—C1—C6—C5 | 179.78 (10) | C14—C15—C16—C17 | −0.5 (3) |
| C2—C1—C6—N1 | −179.98 (11) | C13—C12—C17—C16 | 0.3 (2) |
| N2—C1—C6—N1 | −0.32 (12) | C11—C12—C17—C16 | 179.09 (14) |
| C1—N2—C7—O1 | −179.06 (13) | C15—C16—C17—C12 | 0.3 (3) |
| C8—N2—C7—O1 | 0.1 (2) |
| H··· | ||||
| C3—H3···O1iii | 0.982 (18) | 2.542 (18) | 3.4997 (18) | 165.1 (14) |
| C16—H16···O1vi | 0.994 (18) | 2.568 (18) | 3.468 (2) | 150.6 (14) |
| C17—H17··· | 1.00 (2) | 2.831 (18) | 3.6964 (17) | 144.6 (15) |