Literature DB >> 21837218

5-Chloro-1-[(E)-3-(dimethyl-amino)-acrylo-yl]-3-methyl-1H-benzimidazol-2(3H)-one-6-chloro-1-[(E)-3-(dimethyl-amino)-acrylo-yl]-3-methyl-1H-benzimid-azol-2(3H)-one (4/1).

Rachida Dardouri, Yousef Kandri Rodi, Natalie Saffon, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

In the reaction of 7-chloro-1,5-benzodiazepine-2,4-dione with N,N-dimethyl-formamide/dimethyl-acetal, the diazepine seven-membered ring undergoes a contraction to form the five-membered ring. The reaction yields two isomers the title compound, C(13)H(14)ClN(3)O(2); the major component has the chlorine-atom substituent in the 5-position of the benzimidazolone ring and the minor component has the chlorine atom in the 6-position. The two isomers form a disordered co-crystal, the chloro-methyl-benzimidazolone portion of both components are disordered with respect to each other in a 4:1 ratio [the refined ratio is 0.816 (5):0.184 (5)]; the dimethyl-amino-cryloyl substitutent is ordered. The double bond of the dimethyl-amino-acryloyl substituent has an E configuration.

Entities:  

Year:  2011        PMID: 21837218      PMCID: PMC3151851          DOI: 10.1107/S1600536811024706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the 7-chloro-1,5-benzodiazepine-2,4-dione reactant, see: Mondieig et al. (2007 ▶).

Experimental

Crystal data

C13H14ClN3O2 M = 279.72 Orthorhombic, a = 7.3145 (2) Å b = 14.2903 (3) Å c = 25.1512 (6) Å V = 2628.96 (11) Å3 Z = 8 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.30 × 0.25 × 0.05 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.918, T max = 0.986 32296 measured reflections 2684 independent reflections 2103 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.067 wR(F 2) = 0.204 S = 1.15 2684 reflections 189 parameters 82 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811024706/xu5248sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811024706/xu5248Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811024706/xu5248Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14ClN3O2F(000) = 1168
Mr = 279.72Dx = 1.413 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5721 reflections
a = 7.3145 (2) Åθ = 2.9–26.2°
b = 14.2903 (3) ŵ = 0.29 mm1
c = 25.1512 (6) ÅT = 293 K
V = 2628.96 (11) Å3Plate, brown
Z = 80.30 × 0.25 × 0.05 mm
Bruker APEXII diffractometer2684 independent reflections
Radiation source: fine-focus sealed tube2103 reflections with I > 2σ(I)
graphiteRint = 0.053
φ and ω scansθmax = 26.4°, θmin = 4.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→9
Tmin = 0.918, Tmax = 0.986k = −14→17
32296 measured reflectionsl = −31→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.067Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.204H-atom parameters constrained
S = 1.15w = 1/[σ2(Fo2) + (0.092P)2 + 3.0624P] where P = (Fo2 + 2Fc2)/3
2684 reflections(Δ/σ)max = 0.001
189 parametersΔρmax = 0.35 e Å3
82 restraintsΔρmin = −0.45 e Å3
xyzUiso*/UeqOcc. (<1)
Cl10.52676 (17)0.77941 (8)0.11089 (4)0.0493 (4)0.816 (5)
O10.5389 (12)0.7581 (9)0.4050 (3)0.0492 (11)0.816 (5)
N10.5117 (6)0.8034 (3)0.31659 (15)0.0341 (8)0.816 (5)
N20.6106 (9)0.6599 (2)0.33224 (15)0.0335 (8)0.816 (5)
C10.6049 (4)0.67203 (15)0.27723 (8)0.0252 (8)0.816 (5)
C20.6483 (5)0.61571 (14)0.23398 (10)0.0316 (8)0.816 (5)
H20.69290.55550.23940.038*0.816 (5)
C30.6252 (5)0.64935 (17)0.18256 (9)0.0372 (9)0.816 (5)
H30.65430.61170.15360.045*0.816 (5)
C40.5586 (6)0.73931 (19)0.17439 (9)0.0376 (10)0.816 (5)
C50.5152 (5)0.79563 (15)0.21764 (11)0.0349 (10)0.816 (5)
H50.47060.85580.21220.042*0.816 (5)
C60.5383 (4)0.76199 (15)0.26906 (10)0.0286 (8)0.816 (5)
C70.4443 (8)0.8980 (3)0.32573 (18)0.0418 (12)0.816 (5)
H7A0.33020.90630.30740.063*0.816 (5)
H7B0.53180.94240.31260.063*0.816 (5)
H7C0.42640.90760.36310.063*0.816 (5)
C80.5526 (9)0.7426 (3)0.3577 (2)0.0367 (10)0.816 (5)
Cl1'0.6682 (7)0.6174 (3)0.13514 (17)0.0493 (4)0.184
O1'0.532 (5)0.766 (5)0.4135 (13)0.0492 (11)0.184
N1'0.500 (3)0.8135 (16)0.3296 (7)0.0341 (8)0.184
N2'0.609 (4)0.6657 (9)0.3400 (7)0.0335 (8)0.184
C1'0.588 (2)0.6955 (10)0.2875 (4)0.0252 (8)0.184
C2'0.632 (3)0.6387 (9)0.2445 (6)0.0316 (8)0.184
H2'0.67600.57850.25020.038*0.184 (5)
C3'0.609 (3)0.6718 (12)0.1930 (5)0.0372 (9)0.184
C4'0.542 (3)0.7617 (13)0.1845 (5)0.0376 (10)0.184
H4'0.52710.78390.15000.045*0.184 (5)
C5'0.499 (3)0.8186 (9)0.2275 (7)0.0349 (10)0.184
H5'0.45490.87870.22180.042*0.184 (5)
C6'0.5221 (18)0.7855 (9)0.2790 (5)0.0286 (8)0.184
C7'0.431 (4)0.9061 (17)0.3435 (11)0.0418 (12)0.184
H7'A0.49760.95280.32410.063*0.184 (5)
H7'B0.44660.91630.38100.063*0.184 (5)
H7'C0.30360.91000.33470.063*0.184 (5)
C8'0.548 (3)0.7466 (13)0.3669 (11)0.0367 (10)0.184
O20.6605 (4)0.50518 (15)0.32831 (9)0.0496 (7)
N30.7521 (4)0.4747 (2)0.48942 (11)0.0491 (8)
C90.6537 (4)0.5735 (2)0.35780 (13)0.0369 (8)
C100.6877 (4)0.5726 (2)0.41357 (13)0.0385 (8)
H100.68480.62780.43310.046*
C110.7244 (5)0.4893 (2)0.43769 (13)0.0419 (8)
H110.73090.43710.41570.050*
C120.7832 (7)0.3809 (3)0.51016 (17)0.0679 (13)
H12A0.79520.33770.48110.102*
H12B0.68160.36270.53200.102*
H12C0.89310.38030.53100.102*
C130.7423 (6)0.5493 (3)0.52792 (14)0.0616 (11)
H13A0.65390.59480.51650.092*
H13B0.85990.57860.53110.092*
H13C0.70640.52430.56180.092*
U11U22U33U12U13U23
Cl10.0640 (7)0.0447 (6)0.0391 (6)−0.0008 (5)0.0014 (5)0.0036 (4)
O10.0615 (18)0.041 (3)0.045 (3)0.0082 (17)0.0003 (18)−0.012 (2)
N10.0370 (16)0.0230 (17)0.042 (2)0.0014 (12)0.0022 (15)−0.0035 (15)
N20.0343 (14)0.0272 (13)0.0391 (18)−0.0006 (12)−0.0039 (15)−0.0031 (12)
C10.0230 (15)0.0169 (17)0.0357 (18)−0.0020 (14)0.0010 (14)−0.0065 (14)
C20.0322 (18)0.0241 (19)0.039 (2)−0.0012 (16)−0.0007 (16)−0.0060 (14)
C30.038 (2)0.036 (2)0.038 (2)−0.0052 (18)0.0046 (17)−0.0077 (16)
C40.037 (2)0.038 (3)0.038 (2)−0.0075 (19)0.0018 (17)−0.0005 (16)
C50.0281 (18)0.0218 (19)0.055 (3)−0.0007 (16)−0.0005 (17)0.0045 (18)
C60.0223 (16)0.016 (2)0.047 (2)−0.0009 (15)0.0009 (14)−0.0027 (14)
C70.049 (2)0.0284 (18)0.048 (3)0.0036 (16)0.003 (2)−0.008 (2)
C80.0359 (18)0.0306 (16)0.044 (3)0.0020 (14)−0.0027 (18)−0.0055 (16)
Cl1'0.0640 (7)0.0447 (6)0.0391 (6)−0.0008 (5)0.0014 (5)0.0036 (4)
O1'0.0615 (18)0.041 (3)0.045 (3)0.0082 (17)0.0003 (18)−0.012 (2)
N1'0.0370 (16)0.0230 (17)0.042 (2)0.0014 (12)0.0022 (15)−0.0035 (15)
N2'0.0343 (14)0.0272 (13)0.0391 (18)−0.0006 (12)−0.0039 (15)−0.0031 (12)
C1'0.0230 (15)0.0169 (17)0.0357 (18)−0.0020 (14)0.0010 (14)−0.0065 (14)
C2'0.0322 (18)0.0241 (19)0.039 (2)−0.0012 (16)−0.0007 (16)−0.0060 (14)
C3'0.038 (2)0.036 (2)0.038 (2)−0.0052 (18)0.0046 (17)−0.0077 (16)
C4'0.037 (2)0.038 (3)0.038 (2)−0.0075 (19)0.0018 (17)−0.0005 (16)
C5'0.0281 (18)0.0218 (19)0.055 (3)−0.0007 (16)−0.0005 (17)0.0045 (18)
C6'0.0223 (16)0.016 (2)0.047 (2)−0.0009 (15)0.0009 (14)−0.0027 (14)
C7'0.049 (2)0.0284 (18)0.048 (3)0.0036 (16)0.003 (2)−0.008 (2)
C8'0.0359 (18)0.0306 (16)0.044 (3)0.0020 (14)−0.0027 (18)−0.0055 (16)
O20.0705 (18)0.0299 (12)0.0483 (14)0.0076 (12)−0.0090 (12)−0.0024 (10)
N30.0491 (18)0.0548 (19)0.0433 (16)0.0079 (15)0.0003 (14)0.0081 (13)
C90.0320 (17)0.0316 (16)0.0470 (18)0.0005 (13)−0.0020 (13)0.0020 (14)
C100.0364 (17)0.0352 (16)0.0439 (17)0.0012 (14)−0.0004 (14)−0.0024 (14)
C110.0386 (19)0.0417 (18)0.0453 (18)0.0013 (15)−0.0004 (14)0.0015 (14)
C120.071 (3)0.074 (3)0.059 (2)0.018 (2)0.011 (2)0.029 (2)
C130.063 (3)0.080 (3)0.0422 (19)−0.003 (2)−0.0037 (19)−0.0049 (19)
Cl1—C41.713 (2)N2'—C91.430 (9)
O1—C81.213 (5)C1'—C2'1.3900
N1—C61.348 (3)C1'—C6'1.3900
N1—C81.383 (5)C2'—C3'1.3900
N1—C71.458 (5)C2'—H2'0.9300
N2—C11.395 (3)C3'—C4'1.3900
N2—C81.409 (4)C4'—C5'1.3900
N2—C91.427 (4)C4'—H4'0.9300
C1—C21.3900C5'—C6'1.3900
C1—C61.3900C5'—H5'0.9300
C2—C31.3900C7'—H7'A0.9600
C2—H20.9300C7'—H7'B0.9600
C3—C41.3900C7'—H7'C0.9600
C3—H30.9300O2—C91.227 (4)
C4—C51.3900N3—C111.333 (4)
C5—C61.3900N3—C131.442 (5)
C5—H50.9300N3—C121.457 (5)
C7—H7A0.9600C9—C101.424 (5)
C7—H7B0.9600C10—C111.363 (5)
C7—H7C0.9600C10—H100.9300
Cl1'—C3'1.705 (8)C11—H110.9300
O1'—C8'1.213 (10)C12—H12A0.9600
N1'—C6'1.343 (10)C12—H12B0.9600
N1'—C8'1.385 (10)C12—H12C0.9600
N1'—C7'1.458 (10)C13—H13A0.9600
N2'—C1'1.395 (9)C13—H13B0.9600
N2'—C8'1.410 (10)C13—H13C0.9600
C6—N1—C8110.9 (4)C5'—C4'—H4'120.0
C6—N1—C7126.6 (4)C3'—C4'—H4'120.0
C8—N1—C7122.5 (3)C4'—C5'—C6'120.0
C1—N2—C8109.7 (3)C4'—C5'—H5'120.0
C1—N2—C9124.1 (3)C6'—C5'—H5'120.0
C8—N2—C9125.9 (4)N1'—C6'—C5'140.1 (15)
C2—C1—C6120.0N1'—C6'—C1'99.9 (15)
C2—C1—N2134.2 (2)C5'—C6'—C1'120.0
C6—C1—N2105.8 (2)N1'—C7'—H7'A109.5
C3—C2—C1120.0N1'—C7'—H7'B109.5
C3—C2—H2120.0H7'A—C7'—H7'B109.5
C1—C2—H2120.0N1'—C7'—H7'C109.5
C4—C3—C2120.0H7'A—C7'—H7'C109.5
C4—C3—H3120.0H7'B—C7'—H7'C109.5
C2—C3—H3120.0O1'—C8'—N1'118 (4)
C5—C4—C3120.0O1'—C8'—N2'133 (4)
C5—C4—Cl1120.32 (15)N1'—C8'—N2'109 (2)
C3—C4—Cl1119.67 (15)C11—N3—C13122.1 (3)
C4—C5—C6120.0C11—N3—C12121.2 (3)
C4—C5—H5120.0C13—N3—C12116.6 (3)
C6—C5—H5120.0O2—C9—C10125.5 (3)
N1—C6—C5131.0 (3)O2—C9—N2115.1 (3)
N1—C6—C1109.0 (3)C10—C9—N2119.3 (3)
C5—C6—C1120.0O2—C9—N2'123.6 (8)
O1—C8—N1126.9 (8)C10—C9—N2'110.9 (8)
O1—C8—N2128.5 (8)C11—C10—C9118.7 (3)
N1—C8—N2104.6 (4)C11—C10—H10120.6
C6'—N1'—C8'114 (2)C9—C10—H10120.6
C6'—N1'—C7'122.7 (19)N3—C11—C10127.0 (3)
C8'—N1'—C7'123.5 (16)N3—C11—H11116.5
C1'—N2'—C8'99.7 (15)C10—C11—H11116.5
C1'—N2'—C9127.0 (15)N3—C12—H12A109.5
C8'—N2'—C9132.6 (15)N3—C12—H12B109.5
C2'—C1'—C6'120.0H12A—C12—H12B109.5
C2'—C1'—N2'122.3 (12)N3—C12—H12C109.5
C6'—C1'—N2'117.7 (12)H12A—C12—H12C109.5
C1'—C2'—C3'120.0H12B—C12—H12C109.5
C1'—C2'—H2'120.0N3—C13—H13A109.5
C3'—C2'—H2'120.0N3—C13—H13B109.5
C2'—C3'—C4'120.0H13A—C13—H13B109.5
C2'—C3'—Cl1'127.5 (11)N3—C13—H13C109.5
C4'—C3'—Cl1'112.3 (11)H13A—C13—H13C109.5
C5'—C4'—C3'120.0H13B—C13—H13C109.5
C8—N2—C1—C2178.9 (2)Cl1'—C3'—C4'—C5'−175.6 (11)
C9—N2—C1—C2−6.1 (7)C3'—C4'—C5'—C6'0.0
C8—N2—C1—C6−1.5 (3)C8'—N1'—C6'—C5'180.0 (3)
C9—N2—C1—C6173.4 (5)C7'—N1'—C6'—C5'0.1 (8)
C6—C1—C2—C30.0C8'—N1'—C6'—C1'−0.1 (5)
N2—C1—C2—C3179.5 (3)C7'—N1'—C6'—C1'−180.0 (5)
C1—C2—C3—C40.0C4'—C5'—C6'—N1'180.0 (4)
C2—C3—C4—C50.0C4'—C5'—C6'—C1'0.0
C2—C3—C4—Cl1−178.8 (3)C2'—C1'—C6'—N1'−180.0 (3)
C3—C4—C5—C60.0N2'—C1'—C6'—N1'0.0 (4)
Cl1—C4—C5—C6178.8 (3)C2'—C1'—C6'—C5'0.0
C8—N1—C6—C5180.0 (2)N2'—C1'—C6'—C5'−180.0 (3)
C7—N1—C6—C51.7 (5)C6'—N1'—C8'—O1'−180.0 (6)
C8—N1—C6—C1−2.1 (3)C7'—N1'—C8'—O1'−0.1 (10)
C7—N1—C6—C1179.6 (3)C6'—N1'—C8'—N2'0.1 (7)
C4—C5—C6—N1177.7 (3)C7'—N1'—C8'—N2'180.0 (6)
C4—C5—C6—C10.0C1'—N2'—C8'—O1'−180.0 (7)
C2—C1—C6—N1−178.2 (2)C9—N2'—C8'—O1'9(3)
N2—C1—C6—N12.2 (3)C1'—N2'—C8'—N1'0.0 (6)
C2—C1—C6—C50.0C9—N2'—C8'—N1'−172 (2)
N2—C1—C6—C5−179.6 (2)C1—N2—C9—O2−10.2 (7)
C6—N1—C8—O1−178.3 (4)C8—N2—C9—O2164.0 (4)
C7—N1—C8—O10.1 (7)C1—N2—C9—C10168.9 (4)
C6—N1—C8—N21.1 (4)C8—N2—C9—C10−17.0 (6)
C7—N1—C8—N2179.5 (4)C1—N2—C9—N2'178 (9)
C1—N2—C8—O1179.7 (4)C8—N2—C9—N2'−8(9)
C9—N2—C8—O14.8 (8)C1'—N2'—C9—O2−8(2)
C1—N2—C8—N10.3 (4)C8'—N2'—C9—O2161.0 (11)
C9—N2—C8—N1−174.5 (5)C1'—N2'—C9—C10171.9 (12)
C8'—N2'—C1'—C2'−180.0 (3)C8'—N2'—C9—C10−19 (2)
C9—N2'—C1'—C2'−8(2)C1'—N2'—C9—N20(7)
C8'—N2'—C1'—C6'0.0 (5)C8'—N2'—C9—N2170 (10)
C9—N2'—C1'—C6'172 (2)O2—C9—C10—C11−2.6 (5)
C6'—C1'—C2'—C3'0.0N2—C9—C10—C11178.5 (4)
N2'—C1'—C2'—C3'180.0 (3)N2'—C9—C10—C11177.1 (12)
C1'—C2'—C3'—C4'0.0C13—N3—C11—C101.3 (6)
C1'—C2'—C3'—Cl1'174.9 (13)C12—N3—C11—C10177.6 (4)
C2'—C3'—C4'—C5'0.0C9—C10—C11—N3−177.1 (3)
  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  Crystal structure and Hirshfeld surface analysis of 1-benzyl-3-(prop-2-yn-1-yl)-2,3-di-hydro-1H-1,3-benzo-diazol-2-one.

Authors:  Asmaa Saber; Nada Kheira Sebbar; Tuncer Hökelek; Mohamed El Hafi; Joel T Mague; El Mokhtar Essassi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-11-22

2.  Crystal structure of 5-chloro-1,3-bis-[2-(2-oxo-1,3-oxazolidin-3-yl)eth-yl]-1H-benz-imidazol-2(3H)-one.

Authors:  Kaoutar Bouayad; Youssef Kandri Rodi; Youness Ouzidan; El Mokhtar Essassi; Mohamed Saadi; Lahcen El Ammari
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