| Literature DB >> 21837218 |
Rachida Dardouri, Yousef Kandri Rodi, Natalie Saffon, El Mokhtar Essassi, Seik Weng Ng.
Abstract
In the reaction of 7-chloro-1,5-benzodiazepine-2,4-dione with N,N-dimethyl-formamide/dimethyl-acetal, the diazepine seven-membered ring undergoes a contraction to form the five-membered ring. The reaction yields two isomers the title compound, C(13)H(14)ClN(3)O(2); the major component has the chlorine-atom substituent in the 5-position of the benzimidazolone ring and the minor component has the chlorine atom in the 6-position. The two isomers form a disordered co-crystal, the chloro-methyl-benzimidazolone portion of both components are disordered with respect to each other in a 4:1 ratio [the refined ratio is 0.816 (5):0.184 (5)]; the dimethyl-amino-cryloyl substitutent is ordered. The double bond of the dimethyl-amino-acryloyl substituent has an E configuration.Entities:
Year: 2011 PMID: 21837218 PMCID: PMC3151851 DOI: 10.1107/S1600536811024706
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H14ClN3O2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 5721 reflections |
| θ = 2.9–26.2° | |
| µ = 0.29 mm−1 | |
| Plate, brown | |
| 0.30 × 0.25 × 0.05 mm |
| Bruker APEXII diffractometer | 2684 independent reflections |
| Radiation source: fine-focus sealed tube | 2103 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.4°, θmin = 4.0° |
| Absorption correction: multi-scan ( | |
| 32296 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2684 reflections | (Δ/σ)max = 0.001 |
| 189 parameters | Δρmax = 0.35 e Å−3 |
| 82 restraints | Δρmin = −0.45 e Å−3 |
| Occ. (<1) | |||||
| Cl1 | 0.52676 (17) | 0.77941 (8) | 0.11089 (4) | 0.0493 (4) | 0.816 (5) |
| O1 | 0.5389 (12) | 0.7581 (9) | 0.4050 (3) | 0.0492 (11) | 0.816 (5) |
| N1 | 0.5117 (6) | 0.8034 (3) | 0.31659 (15) | 0.0341 (8) | 0.816 (5) |
| N2 | 0.6106 (9) | 0.6599 (2) | 0.33224 (15) | 0.0335 (8) | 0.816 (5) |
| C1 | 0.6049 (4) | 0.67203 (15) | 0.27723 (8) | 0.0252 (8) | 0.816 (5) |
| C2 | 0.6483 (5) | 0.61571 (14) | 0.23398 (10) | 0.0316 (8) | 0.816 (5) |
| H2 | 0.6929 | 0.5555 | 0.2394 | 0.038* | 0.816 (5) |
| C3 | 0.6252 (5) | 0.64935 (17) | 0.18256 (9) | 0.0372 (9) | 0.816 (5) |
| H3 | 0.6543 | 0.6117 | 0.1536 | 0.045* | 0.816 (5) |
| C4 | 0.5586 (6) | 0.73931 (19) | 0.17439 (9) | 0.0376 (10) | 0.816 (5) |
| C5 | 0.5152 (5) | 0.79563 (15) | 0.21764 (11) | 0.0349 (10) | 0.816 (5) |
| H5 | 0.4706 | 0.8558 | 0.2122 | 0.042* | 0.816 (5) |
| C6 | 0.5383 (4) | 0.76199 (15) | 0.26906 (10) | 0.0286 (8) | 0.816 (5) |
| C7 | 0.4443 (8) | 0.8980 (3) | 0.32573 (18) | 0.0418 (12) | 0.816 (5) |
| H7A | 0.3302 | 0.9063 | 0.3074 | 0.063* | 0.816 (5) |
| H7B | 0.5318 | 0.9424 | 0.3126 | 0.063* | 0.816 (5) |
| H7C | 0.4264 | 0.9076 | 0.3631 | 0.063* | 0.816 (5) |
| C8 | 0.5526 (9) | 0.7426 (3) | 0.3577 (2) | 0.0367 (10) | 0.816 (5) |
| Cl1' | 0.6682 (7) | 0.6174 (3) | 0.13514 (17) | 0.0493 (4) | 0.184 |
| O1' | 0.532 (5) | 0.766 (5) | 0.4135 (13) | 0.0492 (11) | 0.184 |
| N1' | 0.500 (3) | 0.8135 (16) | 0.3296 (7) | 0.0341 (8) | 0.184 |
| N2' | 0.609 (4) | 0.6657 (9) | 0.3400 (7) | 0.0335 (8) | 0.184 |
| C1' | 0.588 (2) | 0.6955 (10) | 0.2875 (4) | 0.0252 (8) | 0.184 |
| C2' | 0.632 (3) | 0.6387 (9) | 0.2445 (6) | 0.0316 (8) | 0.184 |
| H2' | 0.6760 | 0.5785 | 0.2502 | 0.038* | 0.184 (5) |
| C3' | 0.609 (3) | 0.6718 (12) | 0.1930 (5) | 0.0372 (9) | 0.184 |
| C4' | 0.542 (3) | 0.7617 (13) | 0.1845 (5) | 0.0376 (10) | 0.184 |
| H4' | 0.5271 | 0.7839 | 0.1500 | 0.045* | 0.184 (5) |
| C5' | 0.499 (3) | 0.8186 (9) | 0.2275 (7) | 0.0349 (10) | 0.184 |
| H5' | 0.4549 | 0.8787 | 0.2218 | 0.042* | 0.184 (5) |
| C6' | 0.5221 (18) | 0.7855 (9) | 0.2790 (5) | 0.0286 (8) | 0.184 |
| C7' | 0.431 (4) | 0.9061 (17) | 0.3435 (11) | 0.0418 (12) | 0.184 |
| H7'A | 0.4976 | 0.9528 | 0.3241 | 0.063* | 0.184 (5) |
| H7'B | 0.4466 | 0.9163 | 0.3810 | 0.063* | 0.184 (5) |
| H7'C | 0.3036 | 0.9100 | 0.3347 | 0.063* | 0.184 (5) |
| C8' | 0.548 (3) | 0.7466 (13) | 0.3669 (11) | 0.0367 (10) | 0.184 |
| O2 | 0.6605 (4) | 0.50518 (15) | 0.32831 (9) | 0.0496 (7) | |
| N3 | 0.7521 (4) | 0.4747 (2) | 0.48942 (11) | 0.0491 (8) | |
| C9 | 0.6537 (4) | 0.5735 (2) | 0.35780 (13) | 0.0369 (8) | |
| C10 | 0.6877 (4) | 0.5726 (2) | 0.41357 (13) | 0.0385 (8) | |
| H10 | 0.6848 | 0.6278 | 0.4331 | 0.046* | |
| C11 | 0.7244 (5) | 0.4893 (2) | 0.43769 (13) | 0.0419 (8) | |
| H11 | 0.7309 | 0.4371 | 0.4157 | 0.050* | |
| C12 | 0.7832 (7) | 0.3809 (3) | 0.51016 (17) | 0.0679 (13) | |
| H12A | 0.7952 | 0.3377 | 0.4811 | 0.102* | |
| H12B | 0.6816 | 0.3627 | 0.5320 | 0.102* | |
| H12C | 0.8931 | 0.3803 | 0.5310 | 0.102* | |
| C13 | 0.7423 (6) | 0.5493 (3) | 0.52792 (14) | 0.0616 (11) | |
| H13A | 0.6539 | 0.5948 | 0.5165 | 0.092* | |
| H13B | 0.8599 | 0.5786 | 0.5311 | 0.092* | |
| H13C | 0.7064 | 0.5243 | 0.5618 | 0.092* |
| Cl1 | 0.0640 (7) | 0.0447 (6) | 0.0391 (6) | −0.0008 (5) | 0.0014 (5) | 0.0036 (4) |
| O1 | 0.0615 (18) | 0.041 (3) | 0.045 (3) | 0.0082 (17) | 0.0003 (18) | −0.012 (2) |
| N1 | 0.0370 (16) | 0.0230 (17) | 0.042 (2) | 0.0014 (12) | 0.0022 (15) | −0.0035 (15) |
| N2 | 0.0343 (14) | 0.0272 (13) | 0.0391 (18) | −0.0006 (12) | −0.0039 (15) | −0.0031 (12) |
| C1 | 0.0230 (15) | 0.0169 (17) | 0.0357 (18) | −0.0020 (14) | 0.0010 (14) | −0.0065 (14) |
| C2 | 0.0322 (18) | 0.0241 (19) | 0.039 (2) | −0.0012 (16) | −0.0007 (16) | −0.0060 (14) |
| C3 | 0.038 (2) | 0.036 (2) | 0.038 (2) | −0.0052 (18) | 0.0046 (17) | −0.0077 (16) |
| C4 | 0.037 (2) | 0.038 (3) | 0.038 (2) | −0.0075 (19) | 0.0018 (17) | −0.0005 (16) |
| C5 | 0.0281 (18) | 0.0218 (19) | 0.055 (3) | −0.0007 (16) | −0.0005 (17) | 0.0045 (18) |
| C6 | 0.0223 (16) | 0.016 (2) | 0.047 (2) | −0.0009 (15) | 0.0009 (14) | −0.0027 (14) |
| C7 | 0.049 (2) | 0.0284 (18) | 0.048 (3) | 0.0036 (16) | 0.003 (2) | −0.008 (2) |
| C8 | 0.0359 (18) | 0.0306 (16) | 0.044 (3) | 0.0020 (14) | −0.0027 (18) | −0.0055 (16) |
| Cl1' | 0.0640 (7) | 0.0447 (6) | 0.0391 (6) | −0.0008 (5) | 0.0014 (5) | 0.0036 (4) |
| O1' | 0.0615 (18) | 0.041 (3) | 0.045 (3) | 0.0082 (17) | 0.0003 (18) | −0.012 (2) |
| N1' | 0.0370 (16) | 0.0230 (17) | 0.042 (2) | 0.0014 (12) | 0.0022 (15) | −0.0035 (15) |
| N2' | 0.0343 (14) | 0.0272 (13) | 0.0391 (18) | −0.0006 (12) | −0.0039 (15) | −0.0031 (12) |
| C1' | 0.0230 (15) | 0.0169 (17) | 0.0357 (18) | −0.0020 (14) | 0.0010 (14) | −0.0065 (14) |
| C2' | 0.0322 (18) | 0.0241 (19) | 0.039 (2) | −0.0012 (16) | −0.0007 (16) | −0.0060 (14) |
| C3' | 0.038 (2) | 0.036 (2) | 0.038 (2) | −0.0052 (18) | 0.0046 (17) | −0.0077 (16) |
| C4' | 0.037 (2) | 0.038 (3) | 0.038 (2) | −0.0075 (19) | 0.0018 (17) | −0.0005 (16) |
| C5' | 0.0281 (18) | 0.0218 (19) | 0.055 (3) | −0.0007 (16) | −0.0005 (17) | 0.0045 (18) |
| C6' | 0.0223 (16) | 0.016 (2) | 0.047 (2) | −0.0009 (15) | 0.0009 (14) | −0.0027 (14) |
| C7' | 0.049 (2) | 0.0284 (18) | 0.048 (3) | 0.0036 (16) | 0.003 (2) | −0.008 (2) |
| C8' | 0.0359 (18) | 0.0306 (16) | 0.044 (3) | 0.0020 (14) | −0.0027 (18) | −0.0055 (16) |
| O2 | 0.0705 (18) | 0.0299 (12) | 0.0483 (14) | 0.0076 (12) | −0.0090 (12) | −0.0024 (10) |
| N3 | 0.0491 (18) | 0.0548 (19) | 0.0433 (16) | 0.0079 (15) | 0.0003 (14) | 0.0081 (13) |
| C9 | 0.0320 (17) | 0.0316 (16) | 0.0470 (18) | 0.0005 (13) | −0.0020 (13) | 0.0020 (14) |
| C10 | 0.0364 (17) | 0.0352 (16) | 0.0439 (17) | 0.0012 (14) | −0.0004 (14) | −0.0024 (14) |
| C11 | 0.0386 (19) | 0.0417 (18) | 0.0453 (18) | 0.0013 (15) | −0.0004 (14) | 0.0015 (14) |
| C12 | 0.071 (3) | 0.074 (3) | 0.059 (2) | 0.018 (2) | 0.011 (2) | 0.029 (2) |
| C13 | 0.063 (3) | 0.080 (3) | 0.0422 (19) | −0.003 (2) | −0.0037 (19) | −0.0049 (19) |
| Cl1—C4 | 1.713 (2) | N2'—C9 | 1.430 (9) |
| O1—C8 | 1.213 (5) | C1'—C2' | 1.3900 |
| N1—C6 | 1.348 (3) | C1'—C6' | 1.3900 |
| N1—C8 | 1.383 (5) | C2'—C3' | 1.3900 |
| N1—C7 | 1.458 (5) | C2'—H2' | 0.9300 |
| N2—C1 | 1.395 (3) | C3'—C4' | 1.3900 |
| N2—C8 | 1.409 (4) | C4'—C5' | 1.3900 |
| N2—C9 | 1.427 (4) | C4'—H4' | 0.9300 |
| C1—C2 | 1.3900 | C5'—C6' | 1.3900 |
| C1—C6 | 1.3900 | C5'—H5' | 0.9300 |
| C2—C3 | 1.3900 | C7'—H7'A | 0.9600 |
| C2—H2 | 0.9300 | C7'—H7'B | 0.9600 |
| C3—C4 | 1.3900 | C7'—H7'C | 0.9600 |
| C3—H3 | 0.9300 | O2—C9 | 1.227 (4) |
| C4—C5 | 1.3900 | N3—C11 | 1.333 (4) |
| C5—C6 | 1.3900 | N3—C13 | 1.442 (5) |
| C5—H5 | 0.9300 | N3—C12 | 1.457 (5) |
| C7—H7A | 0.9600 | C9—C10 | 1.424 (5) |
| C7—H7B | 0.9600 | C10—C11 | 1.363 (5) |
| C7—H7C | 0.9600 | C10—H10 | 0.9300 |
| Cl1'—C3' | 1.705 (8) | C11—H11 | 0.9300 |
| O1'—C8' | 1.213 (10) | C12—H12A | 0.9600 |
| N1'—C6' | 1.343 (10) | C12—H12B | 0.9600 |
| N1'—C8' | 1.385 (10) | C12—H12C | 0.9600 |
| N1'—C7' | 1.458 (10) | C13—H13A | 0.9600 |
| N2'—C1' | 1.395 (9) | C13—H13B | 0.9600 |
| N2'—C8' | 1.410 (10) | C13—H13C | 0.9600 |
| C6—N1—C8 | 110.9 (4) | C5'—C4'—H4' | 120.0 |
| C6—N1—C7 | 126.6 (4) | C3'—C4'—H4' | 120.0 |
| C8—N1—C7 | 122.5 (3) | C4'—C5'—C6' | 120.0 |
| C1—N2—C8 | 109.7 (3) | C4'—C5'—H5' | 120.0 |
| C1—N2—C9 | 124.1 (3) | C6'—C5'—H5' | 120.0 |
| C8—N2—C9 | 125.9 (4) | N1'—C6'—C5' | 140.1 (15) |
| C2—C1—C6 | 120.0 | N1'—C6'—C1' | 99.9 (15) |
| C2—C1—N2 | 134.2 (2) | C5'—C6'—C1' | 120.0 |
| C6—C1—N2 | 105.8 (2) | N1'—C7'—H7'A | 109.5 |
| C3—C2—C1 | 120.0 | N1'—C7'—H7'B | 109.5 |
| C3—C2—H2 | 120.0 | H7'A—C7'—H7'B | 109.5 |
| C1—C2—H2 | 120.0 | N1'—C7'—H7'C | 109.5 |
| C4—C3—C2 | 120.0 | H7'A—C7'—H7'C | 109.5 |
| C4—C3—H3 | 120.0 | H7'B—C7'—H7'C | 109.5 |
| C2—C3—H3 | 120.0 | O1'—C8'—N1' | 118 (4) |
| C5—C4—C3 | 120.0 | O1'—C8'—N2' | 133 (4) |
| C5—C4—Cl1 | 120.32 (15) | N1'—C8'—N2' | 109 (2) |
| C3—C4—Cl1 | 119.67 (15) | C11—N3—C13 | 122.1 (3) |
| C4—C5—C6 | 120.0 | C11—N3—C12 | 121.2 (3) |
| C4—C5—H5 | 120.0 | C13—N3—C12 | 116.6 (3) |
| C6—C5—H5 | 120.0 | O2—C9—C10 | 125.5 (3) |
| N1—C6—C5 | 131.0 (3) | O2—C9—N2 | 115.1 (3) |
| N1—C6—C1 | 109.0 (3) | C10—C9—N2 | 119.3 (3) |
| C5—C6—C1 | 120.0 | O2—C9—N2' | 123.6 (8) |
| O1—C8—N1 | 126.9 (8) | C10—C9—N2' | 110.9 (8) |
| O1—C8—N2 | 128.5 (8) | C11—C10—C9 | 118.7 (3) |
| N1—C8—N2 | 104.6 (4) | C11—C10—H10 | 120.6 |
| C6'—N1'—C8' | 114 (2) | C9—C10—H10 | 120.6 |
| C6'—N1'—C7' | 122.7 (19) | N3—C11—C10 | 127.0 (3) |
| C8'—N1'—C7' | 123.5 (16) | N3—C11—H11 | 116.5 |
| C1'—N2'—C8' | 99.7 (15) | C10—C11—H11 | 116.5 |
| C1'—N2'—C9 | 127.0 (15) | N3—C12—H12A | 109.5 |
| C8'—N2'—C9 | 132.6 (15) | N3—C12—H12B | 109.5 |
| C2'—C1'—C6' | 120.0 | H12A—C12—H12B | 109.5 |
| C2'—C1'—N2' | 122.3 (12) | N3—C12—H12C | 109.5 |
| C6'—C1'—N2' | 117.7 (12) | H12A—C12—H12C | 109.5 |
| C1'—C2'—C3' | 120.0 | H12B—C12—H12C | 109.5 |
| C1'—C2'—H2' | 120.0 | N3—C13—H13A | 109.5 |
| C3'—C2'—H2' | 120.0 | N3—C13—H13B | 109.5 |
| C2'—C3'—C4' | 120.0 | H13A—C13—H13B | 109.5 |
| C2'—C3'—Cl1' | 127.5 (11) | N3—C13—H13C | 109.5 |
| C4'—C3'—Cl1' | 112.3 (11) | H13A—C13—H13C | 109.5 |
| C5'—C4'—C3' | 120.0 | H13B—C13—H13C | 109.5 |
| C8—N2—C1—C2 | 178.9 (2) | Cl1'—C3'—C4'—C5' | −175.6 (11) |
| C9—N2—C1—C2 | −6.1 (7) | C3'—C4'—C5'—C6' | 0.0 |
| C8—N2—C1—C6 | −1.5 (3) | C8'—N1'—C6'—C5' | 180.0 (3) |
| C9—N2—C1—C6 | 173.4 (5) | C7'—N1'—C6'—C5' | 0.1 (8) |
| C6—C1—C2—C3 | 0.0 | C8'—N1'—C6'—C1' | −0.1 (5) |
| N2—C1—C2—C3 | 179.5 (3) | C7'—N1'—C6'—C1' | −180.0 (5) |
| C1—C2—C3—C4 | 0.0 | C4'—C5'—C6'—N1' | 180.0 (4) |
| C2—C3—C4—C5 | 0.0 | C4'—C5'—C6'—C1' | 0.0 |
| C2—C3—C4—Cl1 | −178.8 (3) | C2'—C1'—C6'—N1' | −180.0 (3) |
| C3—C4—C5—C6 | 0.0 | N2'—C1'—C6'—N1' | 0.0 (4) |
| Cl1—C4—C5—C6 | 178.8 (3) | C2'—C1'—C6'—C5' | 0.0 |
| C8—N1—C6—C5 | 180.0 (2) | N2'—C1'—C6'—C5' | −180.0 (3) |
| C7—N1—C6—C5 | 1.7 (5) | C6'—N1'—C8'—O1' | −180.0 (6) |
| C8—N1—C6—C1 | −2.1 (3) | C7'—N1'—C8'—O1' | −0.1 (10) |
| C7—N1—C6—C1 | 179.6 (3) | C6'—N1'—C8'—N2' | 0.1 (7) |
| C4—C5—C6—N1 | 177.7 (3) | C7'—N1'—C8'—N2' | 180.0 (6) |
| C4—C5—C6—C1 | 0.0 | C1'—N2'—C8'—O1' | −180.0 (7) |
| C2—C1—C6—N1 | −178.2 (2) | C9—N2'—C8'—O1' | 9(3) |
| N2—C1—C6—N1 | 2.2 (3) | C1'—N2'—C8'—N1' | 0.0 (6) |
| C2—C1—C6—C5 | 0.0 | C9—N2'—C8'—N1' | −172 (2) |
| N2—C1—C6—C5 | −179.6 (2) | C1—N2—C9—O2 | −10.2 (7) |
| C6—N1—C8—O1 | −178.3 (4) | C8—N2—C9—O2 | 164.0 (4) |
| C7—N1—C8—O1 | 0.1 (7) | C1—N2—C9—C10 | 168.9 (4) |
| C6—N1—C8—N2 | 1.1 (4) | C8—N2—C9—C10 | −17.0 (6) |
| C7—N1—C8—N2 | 179.5 (4) | C1—N2—C9—N2' | 178 (9) |
| C1—N2—C8—O1 | 179.7 (4) | C8—N2—C9—N2' | −8(9) |
| C9—N2—C8—O1 | 4.8 (8) | C1'—N2'—C9—O2 | −8(2) |
| C1—N2—C8—N1 | 0.3 (4) | C8'—N2'—C9—O2 | 161.0 (11) |
| C9—N2—C8—N1 | −174.5 (5) | C1'—N2'—C9—C10 | 171.9 (12) |
| C8'—N2'—C1'—C2' | −180.0 (3) | C8'—N2'—C9—C10 | −19 (2) |
| C9—N2'—C1'—C2' | −8(2) | C1'—N2'—C9—N2 | 0(7) |
| C8'—N2'—C1'—C6' | 0.0 (5) | C8'—N2'—C9—N2 | 170 (10) |
| C9—N2'—C1'—C6' | 172 (2) | O2—C9—C10—C11 | −2.6 (5) |
| C6'—C1'—C2'—C3' | 0.0 | N2—C9—C10—C11 | 178.5 (4) |
| N2'—C1'—C2'—C3' | 180.0 (3) | N2'—C9—C10—C11 | 177.1 (12) |
| C1'—C2'—C3'—C4' | 0.0 | C13—N3—C11—C10 | 1.3 (6) |
| C1'—C2'—C3'—Cl1' | 174.9 (13) | C12—N3—C11—C10 | 177.6 (4) |
| C2'—C3'—C4'—C5' | 0.0 | C9—C10—C11—N3 | −177.1 (3) |