Literature DB >> 30572024

Cell-free supplement mixtures: Elucidating the history and biochemical utility of additives used to support in vitro protein synthesis in E. coli extract.

By Jared L Dopp1, Denis D Tamiev2, Nigel F Reuel3.   

Abstract

Cell-free protein synthesis (CFPS) has become an established biotechnology tool for rapid protein expression. Over the past few decades many advances have elevated CFPS from a niche, low-efficiency system to one now capable of biomanufacturing custom proteins. Many research papers and reviews exist on the advances made in CFPS genetic template and cell extract preparation for use in E. coli systems. What is currently missing from the literature is a comprehensive review on the myriad of supplement recipes added to the CFPS reaction to support metabolism, transcription, and translation. This list of supplements has changed over the years, with a general drive towards greater simplification. Herein we provide a comprehensive list of the supplements used in CFPS, tracing major recipe classes as the field has evolved. We also provide an in-depth analysis of the proposed biochemical purpose each supplement has in the reaction. This review reveals the significance of correct supplements on overall CFPS productivity; however, the large range of supplements accommodated by CFPS also shows an inherent flexibility in the CFPS reaction as well as additional room for optimization and recipe simplification.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell-free protein synthesis (CFPS); E coli; extract; in vitro protein synthesis; protein expression

Mesh:

Substances:

Year:  2018        PMID: 30572024     DOI: 10.1016/j.biotechadv.2018.12.006

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  19 in total

1.  A Streptomyces venezuelae Cell-Free Toolkit for Synthetic Biology.

Authors:  Simon J Moore; Hung-En Lai; Soo-Mei Chee; Ming Toh; Seth Coode; Kameshwari Chengan; Patrick Capel; Christophe Corre; Emmanuel Lc de Los Santos; Paul S Freemont
Journal:  ACS Synth Biol       Date:  2021-01-26       Impact factor: 5.110

2.  Preparation and Screening of Cell-Free Extract from Nongrowing Escherichia coli A19 Cells.

Authors:  Florian Hiering; Jurek Failmezger; Martin Siemann-Herzberg
Journal:  Methods Mol Biol       Date:  2022

3.  Simple Extract Preparation Methods for E. coli-Based Cell-Free Expression.

Authors:  Alissa C Mullin; Taylor Slouka; Javin P Oza
Journal:  Methods Mol Biol       Date:  2022

4.  Variability in cell-free expression reactions can impact qualitative genetic circuit characterization.

Authors:  Katherine A Rhea; Nathan D McDonald; Stephanie D Cole; Vincent Noireaux; Matthew W Lux; Patricia E Buckley
Journal:  Synth Biol (Oxf)       Date:  2022-08-02

5.  Rapid, Enzymatic Methods for Amplification of Minimal, Linear Templates for Protein Prototyping using Cell-Free Systems.

Authors:  Jared L Dopp; Nigel F Reuel
Journal:  J Vis Exp       Date:  2021-06-14       Impact factor: 1.424

Review 6.  Step-by-step design of proteins for small molecule interaction: A review on recent milestones.

Authors:  José M Pereira; Maria Vieira; Sérgio M Santos
Journal:  Protein Sci       Date:  2021-05-10       Impact factor: 6.993

7.  Portable environment-signal detection biosensors with cell-free synthetic biosystems.

Authors:  Xiaomei Lin; Yuting Li; Zhixia Li; Rui Hua; Yuyang Xing; Yuan Lu
Journal:  RSC Adv       Date:  2020-10-26       Impact factor: 4.036

Review 8.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

9.  A Crude Extract Preparation and Optimization from a Genomically Engineered Escherichia coli for the Cell-Free Protein Synthesis System: Practical Laboratory Guideline.

Authors:  Jeehye Kim; Caroline E Copeland; Sahana R Padumane; Yong-Chan Kwon
Journal:  Methods Protoc       Date:  2019-08-09

10.  In silico Design of Linear DNA for Robust Cell-Free Gene Expression.

Authors:  Xinjie Chen; Yuan Lu
Journal:  Front Bioeng Biotechnol       Date:  2021-05-18
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