| Literature DB >> 30568931 |
M Fooladi1, H Sharini1, S Masjoodi1, E Khodamoradi2.
Abstract
Background: Quantitative Magnetization Transfer Imaging (QMTI) is often used to quantify the myelin content in multiple sclerosis (MS) lesions and normal appearing brain tissues. Also, automated classifiers such as artificial neural networks (ANNs) can significantly improve the identification and classification processes of MS clinical datasets. Objective: We classified patients with relapsing-remitting multiple sclerosis (RRMS) from healthy subjects using QMTI and T1 longitudinal relaxation time data of brain white matter, then the performance of three ANN-based classifiers have been investigated. Materials andEntities:
Keywords: Artificial Neural Networks ; Magnetic Resonance Imaging; Relapsing Remitting Multiple Sclerosis ; Quantitative Magnetization Transfer Imaging
Year: 2018 PMID: 30568931 PMCID: PMC6280112
Source DB: PubMed Journal: J Biomed Phys Eng ISSN: 2251-7200
Figure1A general block diagram of the ANNs based classification procedure
Participants’ Demographics.
| Male/Female | Age | Mean EDSS Values | Mean Disease Duration (years) | Number of MS Plaques | |
|---|---|---|---|---|---|
|
| 9/21 | 30 (21-41) | ------ | ------ | ------ |
|
| 11/19 | 30.2 (20-45) | 2 | 5 | 134 |
Figure2A sample of white matter masks for a healthy subject
Figure3QMTI-T1 parametric maps for a RRMS patient
Training data set for ANNs modeling.
| Sample Numbers | MTR (%) | Ksat (s-1) | T1sat (ms) | T1 (ms) | RRMS and normal Definition for ANN modelsRRMS:50Normal: 0 |
|---|---|---|---|---|---|
|
| 55.05 | 1.495 | 385.10 | 635.14 | 0 |
|
| 55.80 | 1.381 | 355.38 | 694.62 | 0 |
|
| 55.09 | 1.497 | 361.62 | 645.50 | 0 |
|
| 52.10 | 1.095 | 428.66 | 760.56 | 50 |
|
| 54.68 | 1.205 | 390.55 | 698.15 | 50 |
|
| 53.35 | 1.408 | 496.22 | 826.52 | 50 |
|
| 54.66 | 1.182 | 466.02 | 774.27 | 50 |
|
| 55.27 | 1.174 | 433.15 | 760.95 | 50 |
|
| 55.52 | 1.419 | 394.74 | 656.10 | 50 |
|
| 54.60 | 1.089 | 484.22 | 775.40 | 50 |
|
| 53.27 | 1.210 | 482.05 | 790.67 | 50 |
|
| 54.78 | 1.405 | 458.29 | 715.42 | 50 |
|
| 54.84 | 1.333 | 421.21 | 724.17 | 50 |
|
| 52.02 | 1.179 | 454.94 | 732.42 | 50 |
|
| 52.42 | 1.070 | 388.95 | 695.55 | 50 |
|
| 52.01 | 1.090 | 487.33 | 780.03 | 50 |
|
| 55.58 | 1.322 | 397.88 | 689.30 | 50 |
|
| 54.88 | 1.400 | 392.40 | 687.29 | 50 |
|
| 53.20 | 1.202 | 453.02 | 772.46 | 50 |
|
| 56.38 | 1.409 | 390.74 | 692.77 | 0 |
|
| 56.18 | 1.431 | 384.60 | 672.85 | 0 |
|
| 55.90 | 1.493 | 366.65 | 644.80 | 0 |
|
| 55.40 | 1.385 | 390.85 | 695.67 | 0 |
|
| 56.41 | 1.425 | 358.27 | 632.17 | 0 |
|
| 56.14 | 1.430 | 385.11 | 645.95 | 0 |
|
| 56.01 | 1.458 | 378.80 | 657.43 | 0 |
|
| 56.02 | 1.421 | 387.33 | 638.75 | 0 |
|
| 56.47 | 1.478 | 383.20 | 660.64 | 0 |
|
| 56.00 | 1.478 | 373.80 | 641.18 | 0 |
|
| 54.75 | 1.422 | 379.67 | 646.99 | 0 |
|
| 54.92 | 1.271 | 496.85 | 788.45 | 50 |
|
| 55.05 | 1.319 | 427.60 | 711.51 | 50 |
|
| 52.05 | 1.077 | 425.33 | 730.78 | 50 |
|
| 52.08 | 1.0335 | 396.76 | 691.20 | 50 |
|
| 54.80 | 1.320 | 424.37 | 692.50 | 50 |
|
| 52.47 | 1.072 | 490.40 | 854.47 | 50 |
|
| 54.82 | 1.185 | 455.08 | 743.68 | 50 |
|
| 54.85 | 1.415 | 491.41 | 855.37 | 50 |
|
| 53.30 | 1.091 | 493.71 | 824.51 | 50 |
|
| 52.01 | 1.315 | 468.00 | 727.15 | 50 |
|
| 54.55 | 1.085 | 462.05 | 770.47 | 50 |
|
| 52.12 | 1.180 | 450.95 | 778.62 | 50 |
|
| 55.04 | 1.276 | 436.16 | 714.40 | 50 |
|
| 53.77 | 1.326 | 488.45 | 866.25 | 50 |
|
| 55.00 | 1.498 | 359.37 | 631.82 | 0 |
|
| 55.15 | 1.388 | 395.82 | 690.52 | 0 |
|
| 55.18 | 1.398 | 392.74 | 685.43 | 0 |
|
| 55.27 | 1.441 | 375.86 | 665.63 | 0 |
|
| 55.60 | 1.448 | 366.16 | 630.11 | 0 |
|
| 55.90 | 1.454 | 374.82 | 686.25 | 0 |
|
| 55.56 | 1.488 | 384.80 | 687.20 | 0 |
|
| 55.82 | 1.391 | 388.76 | 688.80 | 0 |
|
| 55.02 | 1.458 | 370.58 | 627.22 | 0 |
|
| 55.47 | 1.447 | 352.15 | 690.25 | 0 |
|
| 55.11 | 1.459 | 373.66 | 659.28 | 0 |
|
| 56.03 | 1.460 | 375.68 | 674.67 | 0 |
|
| 56.06 | 1.411 | 360.55 | 674.82 | 0 |
|
| 55.00 | 1.427 | 366.00 | 675.74 | 0 |
|
| 56.23 | 1.436 | 378.75 | 661.31 | 0 |
|
| 56.05 | 1.427 | 383.35 | 691.65 | 0 |
Training-Testing Partition Pairs.
| Partition Pairs | Training Set | Testing Set |
|---|---|---|
| 1 | Partition {1,2,3,4,5} | Partition {6} |
| 2 | Partition {1,2,3,4,6} | Partition {5} |
| 3 | Partition {1,2,3,5,6} | Partition {4} |
| 4 | Partition {1,2,4,5,6} | Partition {3} |
| 5 | Partition {1,3,4,5,6} | Partition {2} |
| 6 | Partition {2,3,4,5,6} | Partition {1} |
Estimated Output Labels from MLP, RBF and ENN-AIC models for participants
| Sample Numbers | MLP | RBF | ENN-AIC | Normal and Patient definition |
|---|---|---|---|---|
|
| -0.01451 | -0.00658 | -4.6E-05 | 0 |
|
| 0.00181 | 0.02574 | 0.006129 | 0 |
|
| -0.05406 | -0.00960 | -0.00062 | 0 |
|
| -0.02341 | 0.11096 | 0.022492 | 50 |
|
| -0.09248 | 0.04496 | 42.68706 | 50 |
|
| -0.06720 | 0.19317 | 38.40058 | 50 |
|
| -0.05528 | 0.13914 | 49.96256 | 50 |
|
| -0.00923 | 0.67417 | 51.84795 | 50 |
|
| -0.07156 | 0.32359 | 39.46159 | 50 |
|
| 50.00000 | 0.14848 | 29.73741 | 50 |
|
| 12.50000 | 36.36364 | 40.61062 | 50 |
|
| 12.50000 | 53.63630 | 15.36948 | 50 |
|
| 50.00000 | 29.62500 | 55.06200 | 50 |
|
| 50.00000 | 36.38080 | 40.60829 | 50 |
|
| 50.00000 | 28.63400 | 43.06204 | 50 |
|
| 12.50000 | 36.20730 | 37.20354 | 50 |
|
| 12.50000 | 29.07280 | 40.61062 | 50 |
|
| 49.94840 | 34.60870 | 34.57622 | 50 |
|
| 12.50000 | 30.86960 | 27.73782 | 50 |
|
| 35.21211 | 28.69410 | 0.61062 | 0 |
|
| 3.66E-13 | 2.2E-06 | 18.22890 | 0 |
|
| 38.55434 | -7.9E-07 | 16.59923 | 0 |
|
| 35.16543 | 34.84458 | 31.81818 | 0 |
|
| 42.21847 | -7.9E-07 | 21.68982 | 0 |
|
| 42.21760 | 44.44444 | 13.75943 | 0 |
|
| 42.21847 | -7.7E-07 | 12.80289 | 0 |
|
| 42.21847 | 44.44444 | 1.935599 | 0 |
|
| 42.21847 | 42.94037 | 5.987599 | 0 |
|
| 42.21847 | -5.88861 | 22.68833 | 0 |
|
| 51.38184 | 44.44441 | 13.81829 | 0 |
|
| 10.08353 | 33.75715 | 50.00000 | 50 |
|
| 30.34264 | 16.79689 | 28.57143 | 50 |
|
| 30.34264 | 20.05657 | 45.05263 | 50 |
|
| 10.08353 | 20.05657 | 21.05263 | 50 |
|
| 30.34264 | 16.79698 | 49.99518 | 50 |
|
| 10.08353 | 19.21221 | 41.78947 | 50 |
|
| 30.34264 | 16.79689 | 28.57370 | 50 |
|
| 50.45523 | 30.86669 | 21.05263 | 50 |
|
| 51.38184 | 16.79689 | 28.57143 | 50 |
|
| 50.00007 | 33.75715 | 50.00000 | 50 |
|
| 50.00021 | 49.98613 | 47.82543 | 50 |
|
| 50.00007 | 48.22301 | 52.05172 | 50 |
|
| 50.00021 | 47.85065 | 38.72384 | 50 |
|
| 4.68E-05 | 52.68255 | 29.15772 | 50 |
|
| 49.99978 | 1.862144 | 1.55265 | 0 |
|
| 49.96495 | 43.07934 | 22.05158 | 0 |
|
| 0.44288 | 43.07933 | 5.16500 | 0 |
|
| 18.00028 | 1.86214 | 17.36665 | 0 |
|
| 0.000238 | -1.37591 | 9.94998 | 0 |
|
| 2.655436 | -0.00012 | 32.05158 | 0 |
|
| 2.598292 | 0.00620 | 12.51167 | 0 |
|
| 0.00268 | -0.03770 | 11.66926 | 0 |
|
| -1.8E-05 | 0.01030 | 6.23249 | 0 |
|
| 2.59829 | -0.15340 | 5.11669 | 0 |
|
| 2.59829 | -0.06380 | 6.69258 | 0 |
|
| -1.8E-05 | -0.26530 | 0.87901 | 0 |
|
| 0.00111 | -0.19170 | 9.25879 | 0 |
|
| 2.59829 | -0.15700 | 15.87901 | 0 |
|
| 2.59829 | -0.02220 | 6.23249 | 0 |
|
| 0.00041 | -0.20450 | 17.90100 | 0 |
Confusion matrix measurements of three ANN algorithms.
| MLP | RBF | ENN-AIC | ||||
|---|---|---|---|---|---|---|
| RRMS | Normal | RRMS | Normal | RRMS | Normal | |
|
| 16 | 14 | 16 | 14 | 26 | 4 |
|
| 11 | 19 | 8 | 22 | 2 | 28 |
|
| 0.583 | 0.633 | 0.900 | |||
|
| 0.592 | 0.666 | 0.928 | |||
|
| 0.533 | 0.533 | 0.866 | |||
|
| 0.633 | 0.733 | 0.933 | |||
|
| 0.424 | 0.388 | 0.125 | |||
|
| 0.466 | 0.466 | 0.133 | |||
Figure4Comparative analysis graphs for accuracy, sensitivity and precision (PPV)
Figure5Comparative analysis graphs for NPV, FPR and FDR
Figure6Comparison of actual data and the corresponding determination values of the three ANN algorithms for normal and patient datasets