Literature DB >> 30559287

Quantitative biophysical analysis defines key components modulating recruitment of the GTPase KRAS to the plasma membrane.

Bindu Lakshman1, Simon Messing1, Eva M Schmid2, Jeffrey D Clogston3, William K Gillette1, Dominic Esposito1, Bailey Kessing1, Daniel A Fletcher2,4,5, Dwight V Nissley1, Frank McCormick1,6, Andrew G Stephen1, Frantz L Jean-Francois7.   

Abstract

The gene encoding the GTPase KRAS is frequently mutated in pancreatic, lung, and colorectal cancers. The KRAS fraction in the plasma membrane (PM) correlates with activation of the mitogen-activated protein kinase (MAPK) pathway and subsequent cellular proliferation. Understanding KRAS's interaction with the PM is challenging given the complexity of the cellular environment. To gain insight into key components necessary for KRAS signal transduction at the PM, we used synthetic membranes such as liposomes and giant unilamellar vesicles. Using surface plasmon resonance (SPR) spectroscopy, we demonstrated that KRAS and Raf-1 proto-oncogene Ser/Thr kinase (RAF1) domains interact with these membranes primarily through electrostatic interactions with negatively charged lipids reinforced by additional interactions involving phosphatidyl ethanolamine and cholesterol. We found that the RAF1 region spanning RBD through CRD (RBDCRD) interacts with the membrane significantly more strongly than the isolated RBD or CRD domains and synergizes KRAS partitioning to the membrane. We also found that calmodulin and phosphodiesterase 6 delta (PDE6δ), but not galectin3 previously proposed to directly interact with KRAS, passively sequester KRAS and prevent it from partitioning into the PM. RAF1 RBDCRD interacted with membranes preferentially at nonraft lipid domains. Moreover, a C-terminal O-methylation was crucial for KRAS membrane localization. These results contribute to a better understanding of how the KRAS-membrane interaction is tuned by multiple factors whose identification could inform drug discovery efforts to disrupt this critical interaction in diseases such as cancer.

Entities:  

Keywords:  GTPase; MAPK pathway; Raf kinase; Ras protein; lipid raft; liposome; mitogen-activated protein kinase (MAPK); protein-lipid interaction; surface plasmon resonance (SPR)

Mesh:

Substances:

Year:  2018        PMID: 30559287      PMCID: PMC6369290          DOI: 10.1074/jbc.RA118.005669

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  67 in total

1.  Rotational and translational dynamics of ras proteins upon binding to model membrane systems.

Authors:  Alexander Werkmüller; Gemma Triola; Herbert Waldmann; Roland Winter
Journal:  Chemphyschem       Date:  2013-10-02       Impact factor: 3.102

Review 2.  Drugging the undruggable RAS: Mission possible?

Authors:  Adrienne D Cox; Stephen W Fesik; Alec C Kimmelman; Ji Luo; Channing J Der
Journal:  Nat Rev Drug Discov       Date:  2014-10-17       Impact factor: 84.694

3.  Raf-1 kinase possesses distinct binding domains for phosphatidylserine and phosphatidic acid. Phosphatidic acid regulates the translocation of Raf-1 in 12-O-tetradecanoylphorbol-13-acetate-stimulated Madin-Darby canine kidney cells.

Authors:  S Ghosh; J C Strum; V A Sciorra; L Daniel; R M Bell
Journal:  J Biol Chem       Date:  1996-04-05       Impact factor: 5.157

4.  Structural basis of recognition of farnesylated and methylated KRAS4b by PDEδ.

Authors:  Srisathiyanarayanan Dharmaiah; Lakshman Bindu; Timothy H Tran; William K Gillette; Peter H Frank; Rodolfo Ghirlando; Dwight V Nissley; Dominic Esposito; Frank McCormick; Andrew G Stephen; Dhirendra K Simanshu
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

5.  Oncogenic K-Ras Binds to an Anionic Membrane in Two Distinct Orientations: A Molecular Dynamics Analysis.

Authors:  Priyanka Prakash; Yong Zhou; Hong Liang; John F Hancock; Alemayehu A Gorfe
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

6.  Phosphorylated K-Ras limits cell survival by blocking Bcl-xL sensitization of inositol trisphosphate receptors.

Authors:  Pamela J Sung; Frederick D Tsai; Horia Vais; Helen Court; Jun Yang; Nicole Fehrenbacher; J Kevin Foskett; Mark R Philips
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

7.  A ceramide-binding C1 domain mediates kinase suppressor of ras membrane translocation.

Authors:  Xianglei Yin; Mohammad Zafrullah; Hyunmi Lee; Adriana Haimovitz-Friedman; Zvi Fuks; Richard Kolesnick
Journal:  Cell Physiol Biochem       Date:  2009-08-03

Review 8.  Membrane lipids: where they are and how they behave.

Authors:  Gerrit van Meer; Dennis R Voelker; Gerald W Feigenson
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02       Impact factor: 94.444

9.  2-Hydroxyoleate, a nontoxic membrane binding anticancer drug, induces glioma cell differentiation and autophagy.

Authors:  Silvia Terés; Victoria Lladó; Mónica Higuera; Gwendolyn Barceló-Coblijn; Maria Laura Martin; Maria Antònia Noguera-Salvà; Amaia Marcilla-Etxenike; José Manuel García-Verdugo; Mario Soriano-Navarro; Carlos Saus; Ulises Gómez-Pinedo; Xavier Busquets; Pablo V Escribá
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-14       Impact factor: 11.205

10.  Quantitative analysis of molecular partition towards lipid membranes using surface plasmon resonance.

Authors:  Tiago N Figueira; João M Freire; Catarina Cunha-Santos; Montserrat Heras; João Gonçalves; Anne Moscona; Matteo Porotto; Ana Salomé Veiga; Miguel A R B Castanho
Journal:  Sci Rep       Date:  2017-03-30       Impact factor: 4.379

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  16 in total

1.  Production and Membrane Binding of N-Terminally Acetylated, C-Terminally Farnesylated and Carboxymethylated KRAS4b.

Authors:  Simon Messing; Constance Agamasu; Matt Drew; Caroline J DeHart; Andrew G Stephen; William K Gillette
Journal:  Methods Mol Biol       Date:  2021

2.  The Plasma Membrane as a Competitive Inhibitor and Positive Allosteric Modulator of KRas4B Signaling.

Authors:  Chris Neale; Angel E García
Journal:  Biophys J       Date:  2020-01-22       Impact factor: 4.033

3.  Anionic Lipids Impact RAS-Binding Site Accessibility and Membrane Binding Affinity of CRAF RBD-CRD.

Authors:  Timothy Travers; Cesar A López; Constance Agamasu; Jeevapani J Hettige; Simon Messing; Angel E García; Andrew G Stephen; S Gnanakaran
Journal:  Biophys J       Date:  2020-06-27       Impact factor: 4.033

4.  The KRAS and other prenylated polybasic domain membrane anchors recognize phosphatidylserine acyl chain structure.

Authors:  Yong Zhou; Priyanka S Prakash; Hong Liang; Alemayehu A Gorfe; John F Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

5.  Membrane-bound KRAS approximates an entropic ensemble of configurations.

Authors:  Frank Heinrich; Que N Van; Frantz Jean-Francois; Andrew G Stephen; Mathias Lösche
Journal:  Biophys J       Date:  2021-08-10       Impact factor: 3.699

6.  KRAS pathway expression changes in pancreatic cancer models by conventional and experimental taxanes.

Authors:  M Oliverius; D Flasarova; B Mohelnikova-Duchonova; M Ehrlichova; V Hlavac; M Kocik; O Strouhal; P Dvorak; I Ojima; P Soucek
Journal:  Mutagenesis       Date:  2019-12-19       Impact factor: 3.000

7.  Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane.

Authors:  Que N Van; Cesar A López; Marco Tonelli; Troy Taylor; Ben Niu; Christopher B Stanley; Debsindhu Bhowmik; Timothy H Tran; Peter H Frank; Simon Messing; Patrick Alexander; Daniel Scott; Xiaoying Ye; Matt Drew; Oleg Chertov; Mathias Lösche; Arvind Ramanathan; Michael L Gross; Nicolas W Hengartner; William M Westler; John L Markley; Dhirendra K Simanshu; Dwight V Nissley; William K Gillette; Dominic Esposito; Frank McCormick; S Gnanakaran; Frank Heinrich; Andrew G Stephen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

8.  A comprehensive analysis of RAS-effector interactions reveals interaction hotspots and new binding partners.

Authors:  Soheila Rezaei Adariani; Neda S Kazemein Jasemi; Farhad Bazgir; Christoph Wittich; Ehsan Amin; Claus A M Seidel; Radovan Dvorsky; Mohammad R Ahmadian
Journal:  J Biol Chem       Date:  2021-04-27       Impact factor: 5.157

Review 9.  Pleiotropic Roles of Calmodulin in the Regulation of KRas and Rac1 GTPases: Functional Diversity in Health and Disease.

Authors:  Francesc Tebar; Albert Chavero; Neus Agell; Albert Lu; Carles Rentero; Carlos Enrich; Thomas Grewal
Journal:  Int J Mol Sci       Date:  2020-05-23       Impact factor: 5.923

10.  Ras functional proximity proteomics establishes mTORC2 as new direct ras effector.

Authors:  Joanna R Kovalski; Ronald L Shanderson; Paul A Khavari
Journal:  Oncotarget       Date:  2019-08-27
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