Literature DB >> 24115726

Rotational and translational dynamics of ras proteins upon binding to model membrane systems.

Alexander Werkmüller1, Gemma Triola, Herbert Waldmann, Roland Winter.   

Abstract

Plasma-membrane-associated Ras proteins typically control signal transduction processes. As nanoclustering and membrane viscosity sensing provide plausible signaling mechanisms, determination of the rotational and translational dynamics of membrane-bound Ras isoforms can help to link their dynamic mobility to their function. Herein, by using time-resolved fluorescence anisotropy and correlation spectroscopic measurements, we obtain the rotational-correlation time and the translational diffusion coefficient of lipidated boron-dipyrromethene-labeled Ras, both in bulk Ras and upon membrane binding. The results show that the second lipidation motif of N-Ras triggers dimer formation in bulk solution, whereas K-Ras4B is monomeric. Upon membrane binding, an essentially free rotation of the G-domain is observed, along with a high lateral mobility; the latter is essentially limited by the viscosity of the membrane and by lipid-mediated electrostatic interactions. This high diffusional mobility warrants rapid recognition-binding sequences in the membrane-bound state, thereby facilitating efficient interactions between the Ras proteins and scaffolding or effector proteins. The lipid-like rapid lateral diffusion observed here complies with in vivo data.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  diffusion; enzymes; fluorescence; lipids; proteins

Mesh:

Substances:

Year:  2013        PMID: 24115726     DOI: 10.1002/cphc.201300617

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  13 in total

1.  The Ras G Domain Lacks the Intrinsic Propensity to Form Dimers.

Authors:  Elizaveta A Kovrigina; Azamat R Galiakhmetov; Evgenii L Kovrigin
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

2.  Regulation of K-Ras4B Membrane Binding by Calmodulin.

Authors:  Benjamin Sperlich; Shobhna Kapoor; Herbert Waldmann; Roland Winter; Katrin Weise
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

3.  The hanging heart: How KRAS lures its prey to the membrane.

Authors:  Dirk Kessler; Darryl B McConnell
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-30       Impact factor: 11.205

4.  Quantitative biophysical analysis defines key components modulating recruitment of the GTPase KRAS to the plasma membrane.

Authors:  Bindu Lakshman; Simon Messing; Eva M Schmid; Jeffrey D Clogston; William K Gillette; Dominic Esposito; Bailey Kessing; Daniel A Fletcher; Dwight V Nissley; Frank McCormick; Andrew G Stephen; Frantz L Jean-Francois
Journal:  J Biol Chem       Date:  2018-12-17       Impact factor: 5.157

5.  Oncogenic and RASopathy-associated K-RAS mutations relieve membrane-dependent occlusion of the effector-binding site.

Authors:  Mohammad T Mazhab-Jafari; Christopher B Marshall; Matthew J Smith; Geneviève M C Gasmi-Seabrook; Peter B Stathopulos; Fuyuhiko Inagaki; Lewis E Kay; Benjamin G Neel; Mitsuhiko Ikura
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

6.  Membrane-bound KRAS approximates an entropic ensemble of configurations.

Authors:  Frank Heinrich; Que N Van; Frantz Jean-Francois; Andrew G Stephen; Mathias Lösche
Journal:  Biophys J       Date:  2021-08-10       Impact factor: 3.699

7.  A structural model of a Ras-Raf signalosome.

Authors:  Venkatesh P Mysore; Zhi-Wei Zhou; Chiara Ambrogio; Lianbo Li; Jonas N Kapp; Chunya Lu; Qi Wang; Maxwell R Tucker; Jeffrey J Okoro; Gabriela Nagy-Davidescu; Xiaochen Bai; Andreas Plückthun; Pasi A Jänne; Kenneth D Westover; Yibing Shan; David E Shaw
Journal:  Nat Struct Mol Biol       Date:  2021-10-08       Impact factor: 18.361

8.  Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane.

Authors:  Que N Van; Cesar A López; Marco Tonelli; Troy Taylor; Ben Niu; Christopher B Stanley; Debsindhu Bhowmik; Timothy H Tran; Peter H Frank; Simon Messing; Patrick Alexander; Daniel Scott; Xiaoying Ye; Matt Drew; Oleg Chertov; Mathias Lösche; Arvind Ramanathan; Michael L Gross; Nicolas W Hengartner; William M Westler; John L Markley; Dhirendra K Simanshu; Dwight V Nissley; William K Gillette; Dominic Esposito; Frank McCormick; S Gnanakaran; Frank Heinrich; Andrew G Stephen
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-10       Impact factor: 11.205

9.  Computational Equilibrium Thermodynamic and Kinetic Analysis of K-Ras Dimerization through an Effector Binding Surface Suggests Limited Functional Role.

Authors:  Abdallah Sayyed-Ahmad; Kwang-Jin Cho; John F Hancock; Alemayehu A Gorfe
Journal:  J Phys Chem B       Date:  2016-05-11       Impact factor: 2.991

10.  Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers.

Authors:  Priyanka Prakash; Abdallah Sayyed-Ahmad; Kwang-Jin Cho; Drew M Dolino; Wei Chen; Hongyang Li; Barry J Grant; John F Hancock; Alemayehu A Gorfe
Journal:  Sci Rep       Date:  2017-01-09       Impact factor: 4.379

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