Literature DB >> 30552139

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus.

Yiling Yang1, Vinson Lam2, Marie Adomako2, Ryan Simkovsky2,3, Annik Jakob4,5, Nathan C Rockwell6, Susan E Cohen1,7, Arnaud Taton2, Jingtong Wang2, J Clark Lagarias6, Annegret Wilde4,8, David R Nobles9, Jerry J Brand9,10, Susan S Golden11,2.   

Abstract

Many cyanobacteria, which use light as an energy source via photosynthesis, have evolved the ability to guide their movement toward or away from a light source. This process, termed "phototaxis," enables organisms to localize in optimal light environments for improved growth and fitness. Mechanisms of phototaxis have been studied in the coccoid cyanobacterium Synechocystis sp. strain PCC 6803, but the rod-shaped Synechococcus elongatus PCC 7942, studied for circadian rhythms and metabolic engineering, has no phototactic motility. In this study we report a recent environmental isolate of S. elongatus, the strain UTEX 3055, whose genome is 98.5% identical to that of PCC 7942 but which is motile and phototactic. A six-gene operon encoding chemotaxis-like proteins was confirmed to be involved in phototaxis. Environmental light signals are perceived by a cyanobacteriochrome, PixJSe (Synpcc7942_0858), which carries five GAF domains that are responsive to blue/green light and resemble those of PixJ from Synechocystis Plate-based phototaxis assays indicate that UTEX 3055 uses PixJSe to sense blue and green light. Mutation of conserved functional cysteine residues in different GAF domains indicates that PixJSe controls both positive and negative phototaxis, in contrast to the multiple proteins that are employed for implementing bidirectional phototaxis in Synechocystis.

Entities:  

Keywords:  GAF domain; Synechococcus elongatus; cyanobacteria; photoreceptor; phototaxis

Mesh:

Substances:

Year:  2018        PMID: 30552139      PMCID: PMC6310787          DOI: 10.1073/pnas.1812871115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  61 in total

1.  Evolutionary conservation of methyl-accepting chemotaxis protein location in Bacteria and Archaea.

Authors:  J E Gestwicki; A C Lamanna; R M Harshey; L L McCarter; L L Kiessling; J Adler
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

2.  Light-regulated expression of the psbD gene family in Synechococcus sp. strain PCC 7942: evidence for the role of duplicated psbD genes in cyanobacteria.

Authors:  S A Bustos; S S Golden
Journal:  Mol Gen Genet       Date:  1992-03

Review 3.  Light matters: phototaxis and signal transduction in unicellular cyanobacteria.

Authors:  Devaki Bhaya
Journal:  Mol Microbiol       Date:  2004-08       Impact factor: 3.501

4.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

5.  Light-induced alteration of c-di-GMP level controls motility of Synechocystis sp. PCC 6803.

Authors:  Philipp Savakis; Sven De Causmaecker; Veronika Angerer; Ulrike Ruppert; Katrin Anders; Lars-Oliver Essen; Annegret Wilde
Journal:  Mol Microbiol       Date:  2012-06-12       Impact factor: 3.501

6.  High-throughput functional analysis of the Synechococcus elongatus PCC 7942 genome.

Authors:  C Kay Holtman; You Chen; Pamela Sandoval; Alejandra Gonzales; Mark S Nalty; Terry L Thomas; Philip Youderian; Susan S Golden
Journal:  DNA Res       Date:  2005       Impact factor: 4.458

7.  Self-suppression of biofilm formation in the cyanobacterium Synechococcus elongatus.

Authors:  Daniella Schatz; Elad Nagar; Eleonora Sendersky; Rami Parnasa; Shaul Zilberman; Shmuel Carmeli; Yitzhak Mastai; Eyal Shimoni; Eugenia Klein; Orna Yeger; Ziv Reich; Rakefet Schwarz
Journal:  Environ Microbiol       Date:  2013-01-09       Impact factor: 5.491

8.  Characterization of cyanobacteriochrome TePixJ from a thermophilic cyanobacterium Thermosynechococcus elongatus strain BP-1.

Authors:  Takami Ishizuka; Takashi Shimada; Koji Okajima; Shizue Yoshihara; Yuriko Ochiai; Mitsunori Katayama; Masahiko Ikeuchi
Journal:  Plant Cell Physiol       Date:  2006-08-03       Impact factor: 4.927

9.  Cyanobacteriochrome Photoreceptors Lacking the Canonical Cys Residue.

Authors:  Keiji Fushimi; Nathan C Rockwell; Gen Enomoto; Shelley S Martin; Fei Gan; Donald A Bryant; Masahiko Ikeuchi; J Clark Lagarias; Rei Narikawa
Journal:  Biochemistry       Date:  2016-12-09       Impact factor: 3.162

Review 10.  Evolution of phototaxis.

Authors:  Gáspár Jékely
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-10-12       Impact factor: 6.237

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  22 in total

1.  Mechanical regulation of photosynthesis in cyanobacteria.

Authors:  Kristin A Moore; Sabina Altus; Jian W Tay; Janet B Meehl; Evan B Johnson; David M Bortz; Jeffrey C Cameron
Journal:  Nat Microbiol       Date:  2020-03-23       Impact factor: 17.745

2.  A far-red cyanobacteriochrome lineage specific for verdins.

Authors:  Marcus V Moreno; Nathan C Rockwell; Manuel Mora; Andrew J Fisher; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-26       Impact factor: 11.205

Review 3.  Photo-bioconvection: towards light control of flows in active suspensions.

Authors:  A Javadi; J Arrieta; I Tuval; M Polin
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-08-03       Impact factor: 4.226

4.  Phytochromes and Cyanobacteriochromes: Photoreceptor Molecules Incorporating a Linear Tetrapyrrole Chromophore.

Authors:  Keiji Fushimi; Rei Narikawa
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 5.  Phytochrome evolution in 3D: deletion, duplication, and diversification.

Authors:  Nathan C Rockwell; J Clark Lagarias
Journal:  New Phytol       Date:  2019-11-02       Impact factor: 10.151

6.  Differential Phototactic Behavior of Closely Related Cyanobacterial Isolates from Yellowstone Hot Spring Biofilms.

Authors:  Freddy Bunbury; Carlos Rivas; Victoria Calatrava; Amanda N Shelton; Arthur Grossman; Devaki Bhaya
Journal:  Appl Environ Microbiol       Date:  2022-05-02       Impact factor: 5.005

7.  Comparative genomics reveals insights into cyanobacterial evolution and habitat adaptation.

Authors:  Meng-Yun Chen; Wen-Kai Teng; Liang Zhao; Chun-Xiang Hu; Yang-Kai Zhou; Bo-Ping Han; Li-Rong Song; Wen-Sheng Shu
Journal:  ISME J       Date:  2020-09-17       Impact factor: 10.302

8.  Pump-Probe Circular Dichroism Spectroscopy of Cyanobacteriochrome TePixJ Yields: Insights into Its Photoconversion.

Authors:  Jonathan A Clinger; Eefei Chen; David S Kliger; George N Phillips
Journal:  J Phys Chem B       Date:  2020-12-23       Impact factor: 2.991

9.  The cyanobacterial taxis protein HmpF regulates type IV pilus activity in response to light.

Authors:  Thomas V Harwood; Esthefani G Zuniga; HoJun Kweon; Douglas D Risser
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

10.  In vivo Inhibition of the 3-Dehydroquinate Synthase by 7-Deoxysedoheptulose Depends on Promiscuous Uptake by Sugar Transporters in Cyanobacteria.

Authors:  Johanna Rapp; Berenike Wagner; Klaus Brilisauer; Karl Forchhammer
Journal:  Front Microbiol       Date:  2021-06-23       Impact factor: 5.640

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