Literature DB >> 30548045

CRISPR/Cas-based genome engineering in natural product discovery.

Yaojun Tong1, Tilmann Weber, Sang Yup Lee.   

Abstract

Covering: up to February, 2018 This review briefly introduces and summarizes current knowledge about the Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-associated (Cas) - CRISPR/Cas system and how it was engineered to become one of the most important and versatile genome editing techniques that are currently revolutionizing the whole field of molecular biology. It aims to highlight and discuss the applications and remaining challenges of CRISPR/Cas (mainly focusing on CRISPR/SpCas9)-based genome editing in natural product discovery. The organisms covered include bacteria such as Streptomyces, Corynebacteria, and Myxobacteria; filamentous fungi such as Aspergillus, Beauveria, and Ganoderma; microalgae; and some plants. As closing remarks, the prospects of using CRISPR/Cas in natural product discovery will be discussed.

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Year:  2019        PMID: 30548045     DOI: 10.1039/c8np00089a

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  18 in total

Review 1.  Recent metabolomics and gene editing approaches for synthesis of microbial secondary metabolites for drug discovery and development.

Authors:  Rajeshwari Sinha; Babita Sharma; Arun Kumar Dangi; Pratyoosh Shukla
Journal:  World J Microbiol Biotechnol       Date:  2019-10-22       Impact factor: 3.312

2.  Engineering Modular Polyketide Biosynthesis in Streptomyces Using CRISPR/Cas: A Practical Guide.

Authors:  Jean-Malo Massicard; Li Su; Christophe Jacob; Kira J Weissman
Journal:  Methods Mol Biol       Date:  2022

3.  The need to innovate sample collection and library generation in microbial drug discovery: a focus on academia.

Authors:  Antonio Hernandez; Linh T Nguyen; Radhika Dhakal; Brian T Murphy
Journal:  Nat Prod Rep       Date:  2021-03-04       Impact factor: 13.423

4.  Designing sgRNAs for CRISPR-BEST base editing applications with CRISPy-web 2.0.

Authors:  Kai Blin; Simon Shaw; Yaojun Tong; Tilmann Weber
Journal:  Synth Syst Biotechnol       Date:  2020-06-13

5.  Fine-tuning the regulation of Cas9 expression levels for efficient CRISPR-Cas9 mediated recombination in Streptomyces.

Authors:  Suhui Ye; Behnam Enghiad; Huimin Zhao; Eriko Takano
Journal:  J Ind Microbiol Biotechnol       Date:  2020-05-04       Impact factor: 3.346

Review 6.  Dissolution of the Disparate: Co-ordinate Regulation in Antibiotic Biosynthesis.

Authors:  Thomas C McLean; Barrie Wilkinson; Matthew I Hutchings; Rebecca Devine
Journal:  Antibiotics (Basel)       Date:  2019-06-18

Review 7.  Recent Advances in Synthetic Biology Approaches to Optimize Production of Bioactive Natural Products in Actinobacteria.

Authors:  Lei Li; Xiaocao Liu; Weihong Jiang; Yinhua Lu
Journal:  Front Microbiol       Date:  2019-11-05       Impact factor: 5.640

8.  CRISPR-Cas9-Based Discovery of the Verrucosidin Biosynthesis Gene Cluster in Penicillium polonicum.

Authors:  Silvia Valente; Edoardo Piombo; Volker Schroeckh; Giovanna Roberta Meloni; Thorsten Heinekamp; Axel A Brakhage; Davide Spadaro
Journal:  Front Microbiol       Date:  2021-05-21       Impact factor: 5.640

9.  An aurora of natural products-based drug discovery is coming.

Authors:  Yaojun Tong; Zixin Deng
Journal:  Synth Syst Biotechnol       Date:  2020-06-06

10.  Highly efficient DSB-free base editing for streptomycetes with CRISPR-BEST.

Authors:  Yaojun Tong; Christopher M Whitford; Helene L Robertsen; Kai Blin; Tue S Jørgensen; Andreas K Klitgaard; Tetiana Gren; Xinglin Jiang; Tilmann Weber; Sang Yup Lee
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-23       Impact factor: 11.205

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